Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8b03
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 33 0.21
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_21478| Best HMM Match : Branch (HMM E-Value=0) 30 2.0
SB_31957| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_56109| Best HMM Match : Collagen (HMM E-Value=0.79) 29 4.5
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37) 29 4.5
SB_40499| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-09) 28 6.0
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 28 6.0
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.9
SB_11846| Best HMM Match : Collagen (HMM E-Value=0.59) 28 7.9
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36) 28 7.9
SB_20512| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 7.9
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 33.1 bits (72), Expect = 0.21
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +1
Query: 346 PISSADPYSAAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNP---HDSYGM-DGV 513
P+SS + +AGY G A PY + +GT P F G Y P + YG
Sbjct: 384 PLSSRE---SAGYGGAGATPYSGYSQMTAAAMASGT-PSEFSGSYPPGMFNSGYGYGTSA 439
Query: 514 FGPSTTPFSTAAFGQPASTFNYFHGNGDYS 603
G S++ + +A G PAS F G YS
Sbjct: 440 AGASSSTETPSAKGFPASATPEF-PLGSYS 468
>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +1
Query: 244 NQVTNAPKEQHLESGGDELAEVPWRHQQQPSYAPPISSADPYSAAGYYGTT 396
NQ T P Q G P + QQP Y P ++ PYS AG GT+
Sbjct: 129 NQGTPPPSTQQQPGSGG----YPMMYPQQPGYYPAGTAPPPYSEAGVAGTS 175
>SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 31.9 bits (69), Expect = 0.48
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 334 SYAPPISSADPYSAAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGV 513
SY S DP+S +G GTT+ Y G GT+ TN GY+P MD +
Sbjct: 197 SYFIEHGSPDPWSHSGQLGTTSSAYSTSG---GTYGTNYGITAREGMGYHPISHSEMDRL 253
Query: 514 FG-PSTTPFSTAA 549
G P + F A
Sbjct: 254 AGLPPMSSFRQTA 266
>SB_21478| Best HMM Match : Branch (HMM E-Value=0)
Length = 666
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 375 GRLLRYNSTSLSSFWSRGWDMVHKWNRPDDFPRRIQSSR 491
GR + Y+ S+ W+R ++H RP D R+Q+S+
Sbjct: 306 GRTISYSLRPNSTAWARCQSLIHGSTRPSDGGYRLQNSQ 344
>SB_31957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 487 EDCILRGKSSGLFHLWTMSHPRLQKLDKEVLLY 389
+D I+RG+ SGL H T++ +Q D V++Y
Sbjct: 142 DDLIVRGQESGLLHKLTLAEAEVQIDDPIVIVY 174
>SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 241 GNQVTNAPKEQHLESGGDELAEVPWRHQQQPSYAPPISS 357
G +T ++ H GG+E+ E H QP Y P S
Sbjct: 56 GKALTPRRRQTHERRGGEEVREAIRDHSSQPDYRRPADS 94
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/126 (24%), Positives = 41/126 (32%), Gaps = 1/126 (0%)
Frame = +1
Query: 202 MSAGVSDQRMKGQGNQVTNAPKEQHLESGGDELAEVPWRHQQQPSYAPPISSADPYSAAG 381
MS V D + G Q N P H S A PW QQP+ AP P S
Sbjct: 603 MSHPVRDTTITAHGYQEPNEPTVSHTISNAAMAA--PW--GQQPANAP--LEFPPSSEEE 656
Query: 382 YYGTTALPYQAFGVGDGTWSTNGTDPMTF-LGGYNPHDSYGMDGVFGPSTTPFSTAAFGQ 558
+ G A G W D + + + + F P T+ AF
Sbjct: 657 HDGLAATE-SGVDASSGFWDEESADELDVDASSSSSQNPFSQQATFNPVTSSAVLEAFAP 715
Query: 559 PASTFN 576
S+ +
Sbjct: 716 TVSSID 721
>SB_56109| Best HMM Match : Collagen (HMM E-Value=0.79)
Length = 327
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/73 (35%), Positives = 31/73 (42%)
Frame = +1
Query: 418 GVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGVFGPSTTPFSTAAFGQPASTFNYFHGNGD 597
G G G TNG + GG +Y G G TT S FG + F Y G G
Sbjct: 224 GAGAGL-KTNGASGVNATGG----SAYVNGGEGGLGTTG-SEGGFGGGGAAFLYAGGGGG 277
Query: 598 YSTWGQLGRAKQY 636
YS G + RA +Y
Sbjct: 278 YS-GGGVTRATRY 289
>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
Length = 732
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +1
Query: 340 APPISSADPYSAAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYG----MD 507
+PP P S+ G G P A S++ T P++ P D Y +D
Sbjct: 316 SPPSGGIQPSSSQG--GIFGSPLSASNSFGPMISSSSTAPIS---SNPPEDKYSALSALD 370
Query: 508 GVFGPSTTPFSTAAFGQPAST 570
+FGPS+ T + P+ST
Sbjct: 371 TLFGPSSNAGGTVSSSMPSST 391
>SB_40499| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-09)
Length = 418
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 516 WTFNYSILNSGIWTTCLHLQ 575
W+ +Y+++ IWTT HLQ
Sbjct: 345 WSLDYNLVTYVIWTTLFHLQ 364
>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
Length = 889
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +1
Query: 340 APPISSADPYSAAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGVFG 519
AP +S ++ G +G +A FG T S+ T GG+ + G+FG
Sbjct: 638 APSATSQPTTTSGGLFGASAPSGGVFGSSTTTASSTTAQSSTSSGGFF-GSATSSGGLFG 696
Query: 520 PSTTPFSTAA 549
++ P +T++
Sbjct: 697 SASQPSTTSS 706
>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2639
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 503 WMVCLDL-QLLHSQQRHLDNLPPPSTIFTATVTIRHGVS*VVQNN 634
W+ L L L+H+ +R LDN P T + +++ + H V +V N
Sbjct: 1617 WVTLLLLFNLVHTNERPLDNSGKPLTFYPSSLMLGHHVRPLVFYN 1661
>SB_11846| Best HMM Match : Collagen (HMM E-Value=0.59)
Length = 487
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 421 VGDGTWSTNGTDPMTFLGGYNPHDSY-GMDGVFGP 522
VG+G W + D MTF G G DG GP
Sbjct: 71 VGEGLWEVSKVDQMTFKQGLKGDPGRDGKDGKVGP 105
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/58 (22%), Positives = 25/58 (43%)
Frame = +1
Query: 238 QGNQVTNAPKEQHLESGGDELAEVPWRHQQQPSYAPPISSADPYSAAGYYGTTALPYQ 411
Q +T P+ +HL++ G + + P+ PP S P + ++ + P Q
Sbjct: 319 QPTTITAVPQPRHLQTEGSGQQQGTPDSRHAPNVIPPQQSTQPGQQSNFFSSQQQPKQ 376
>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
Length = 551
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 191 NPGQCQQACQISG*KGKGIKL 253
N G C + CQI G GKG +L
Sbjct: 381 NKGPCHRQCQIVGGSGKGARL 401
>SB_20512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = +1
Query: 472 GGYNPHDSYGMDGVFGPSTTPFSTAAFGQPASTFNYFHGNGDYSTWGQLGRAKQYDD 642
GGY + G V P T P G S + +G Y+ G LG Y D
Sbjct: 297 GGYYNNPGSGSQYVCIPETAPQYLTVQGGVQSNGAFMYGTEYYNVGGTLGSGLHYHD 353
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 27.9 bits (59), Expect = 7.9
Identities = 26/103 (25%), Positives = 32/103 (31%)
Frame = +1
Query: 337 YAPPISSADPYSAAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGVF 516
YA P+ AD Y A G P G G G +G P + P + Y
Sbjct: 1187 YAEPVPPADSYPNALGAGFIPGPVFPPGAGYGPEFPSGPGPFNYGPMVGPFNGY------ 1240
Query: 517 GPSTTPFSTAAFGQPASTFNYFHGNGDYSTWGQLGRAKQYDDY 645
GP PF+ P Y G Y+ Y Y
Sbjct: 1241 GPRFGPFNGFGPAGPGPLHGYGPDTGPYAPGPMFNGPAPYRPY 1283
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,848,299
Number of Sequences: 59808
Number of extensions: 505764
Number of successful extensions: 1362
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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