Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b03
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.12 
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    24   1.5  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    24   1.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   3.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   3.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   3.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
 Frame = +1

Query: 262  PKEQHLESGGDE----LAEVPWRHQQQPSYAPPISSADPY 369
            P  +H+ S  D     L    WR QQ P   PP SS   Y
Sbjct: 1329 PLSEHIYSSIDSDYSTLERTAWRQQQPPPPPPPPSSGQAY 1368


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 11  LPNVQLRTFYVGCYVNFCTLRTFLTLFGDSHIC---KTQCSE 127
           L N +LR  Y  C+++  +  T  ++F  SHI    +TQC +
Sbjct: 36  LANDRLRNQYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKK 77


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 11  LPNVQLRTFYVGCYVNFCTLRTFLTLFGDSHIC---KTQCSE 127
           L N +LR  Y  C+++  +  T  ++F  SHI    +TQC +
Sbjct: 36  LANDRLRNQYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKK 77


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +3

Query: 456 PDDFPRRIQSSRFLWNGWCVWTFN---YSILN 542
           PD  P  + SS FLW G+C    N   Y+ LN
Sbjct: 401 PDAIPAFL-SSLFLWLGYCNSLLNPIIYATLN 431


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 505 DGVFGPSTTPFSTAAFGQPASTFNYFHGN 591
           DG+FG + +P +   +  P S+ + ++ N
Sbjct: 252 DGIFGMALSPMTNNLYYSPLSSRSLYYVN 280


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 482 LYPPRKVIGSVPFVDHV 432
           L PP + I SV +++H+
Sbjct: 83  LLPPNRTINSVVYIEHL 99


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 453 CS-ICGPCPIPDSKSLIRKCCC 391
           CS +C P P  +SKS +  C C
Sbjct: 43  CSHLCLPAPRINSKSPLLSCAC 64


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 453 CS-ICGPCPIPDSKSLIRKCCC 391
           CS +C P P  +SKS +  C C
Sbjct: 43  CSHLCLPAPRINSKSPLLSCAC 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,961
Number of Sequences: 438
Number of extensions: 4502
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)