Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b02
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_48379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_38399| Best HMM Match : DUF81 (HMM E-Value=3.6)                     29   5.1  
SB_52854| Best HMM Match : I-set (HMM E-Value=0.22)                    28   6.7  
SB_56774| Best HMM Match : DNA_pol_viral_N (HMM E-Value=0.41)          28   6.7  
SB_17020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 149 CELKRYNHVFDEAGENTHYHSDSDSVASRKSKT 247
           CE   YNH+ DE GEN+ Y    DS  + + +T
Sbjct: 362 CEFPLYNHLKDEPGENS-YIKQQDSSGTSQPQT 393


>SB_48379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +3

Query: 561 LQKKSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTL 683
           L  K   V R +N KL   G   RSK N    VW++KNN L
Sbjct: 22  LNNKLGGVWRSKNNKL---GGVWRSKNNRLGGVWRSKNNRL 59


>SB_38399| Best HMM Match : DUF81 (HMM E-Value=3.6)
          Length = 388

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 480 HLVTIVLIVKMGLTLFDYPWHL 545
           H+V I++I+ + +T  DYP+H+
Sbjct: 327 HMVAIIIIITIIITSSDYPYHM 348


>SB_52854| Best HMM Match : I-set (HMM E-Value=0.22)
          Length = 144

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 348 HTAITGVIRPHS*VDGIRVYLQQV*KENLVHYWEVT 455
           HTA+ G IR  S  + I   LQ     N+  YW++T
Sbjct: 7   HTALVGAIRITSKPEDITKVLQGTLNYNVSWYWDIT 42


>SB_56774| Best HMM Match : DNA_pol_viral_N (HMM E-Value=0.41)
          Length = 886

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 629 KEQEKREKARLEKQKQHTIPATTPEQREASYR 724
           KE++ R++A LEK+KQ  +     E+R A  R
Sbjct: 703 KEEQARKEAELEKEKQEILKKKREERRLARER 734


>SB_17020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 957

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 426  ENLVHYWEVTFKFI*MKTHLVTIVLIVKMGLTLFDYPWHLFLRPQ 560
            +NL H W+   + I +K ++ +  L + +   L+ + W +  RPQ
Sbjct: 882  KNLHHCWQKHGETIVVKQNVASFFLFLVVNRALYCFAWSVCTRPQ 926


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,378,648
Number of Sequences: 59808
Number of extensions: 448082
Number of successful extensions: 1662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)