Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8a23
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   3.0  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    26   4.0  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   5.3  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   7.0  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.0  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    25   9.2  

>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 474 VVEPGLELVPFQLPLDQPY 418
           + E  +ELVPFQL LD  Y
Sbjct: 101 IKENNIELVPFQLTLDYDY 119


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 330 GMQPTHNIADTHALVTAVGTGKGLRPGMANM 422
           G  P HNI   H L  +V  G    P + N+
Sbjct: 140 GQDPYHNIGQAHGLCFSVRPGIPCPPSLVNI 170


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +2

Query: 113 QVEYLRHAIITSSLSHVMLCSCYLQLYRWMMYG 211
           Q + L  A + S ++ +++ + ++ L+ W MYG
Sbjct: 542 QTKKLNRASVISKVAALIITAAFIILWPWPMYG 574


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 391 EKGYDQVWRIWLVKGQLEWDQLEARLHNSV 480
           +KG+   W + LVKG++  D  E ++  S+
Sbjct: 370 DKGHPS-WHVTLVKGKISTDMEECKVSKSI 398


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 149 SLSHVMLCSCYLQLYRWMM 205
           S+S+V+LC C L+  +W++
Sbjct: 435 SISNVLLCGCTLRNSKWVI 453


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 110 NQVEYLRHAIITSSLSHVMLCSCY 181
           N + YL   I+TS LSH+++C  +
Sbjct: 490 NNIAYLL-GIVTSFLSHLIICKIF 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,906
Number of Sequences: 5004
Number of extensions: 36969
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)