Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8a23
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)            30   1.0  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  

>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
          Length = 504

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 231 QKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGM 335
           QK I    ++++ + +II+  +EDWEGE   S G+
Sbjct: 138 QKQINHLNELLTTLTDIITSAKEDWEGE-QNSVGL 171


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +1

Query: 229  SRNTLLNS-LKLSVTFGKLYPKAAKTG 306
            +R T LNS L L+VTFG   P+++K+G
Sbjct: 1809 ARFTFLNSTLDLNVTFGDTLPESSKSG 1835


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,791,760
Number of Sequences: 59808
Number of extensions: 281707
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)