Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8a22
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 1.9
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 2.5
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 4.4
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 26 4.4
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 26 4.4
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 26 4.4
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 26 4.4
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.6
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 7.6
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 426 TTNTEITKGNKTNKNFQEEHLV--GRCTTNTGRANNGRANKSRANKGRAIE 280
T+ T+ ++GNK +KN +E + R N +N + N + K R E
Sbjct: 68 TSKTQDSEGNKVDKNLKENKSIRRKRSIDNDYELSNVKRNDITSGKNREFE 118
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 352 TSAD*VLFLEVFICFVSFCYFCVRGTSADKLSS 450
TS + + F+ F S C VR TS DK+S+
Sbjct: 379 TSVENSSIQDAFLVFRSMCRLAVRQTSPDKVSN 411
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 515 RTKKNHNKTEIAKRNKPIKHFQEDSLSADVP 423
+ K+ K I++ NKP ++ LS DVP
Sbjct: 261 QNKQKEEKKTISQGNKPNSRDEDSELSIDVP 291
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 199 VQTRINHSDRGTIPIEAPVTR-GRAHRPLDRPAFVRPAFVSPAIVRAAC 342
+ TR+N++ + +P+EA V++ A++PL R F+ AF+S R C
Sbjct: 58 IMTRLNNNAQAILPLEALVSQYVEANQPL-RKRFLL-AFISIGEKRIPC 104
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 243 YRNGASIGMINASLNTAVLSMPCIRAMTAALS*AC 139
YR+ SIG++NAS N A S P A++ AC
Sbjct: 9 YRSSKSIGLVNASENYA--SPPKFEAISEPARNAC 41
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 456 VFNWFVSFCYFRFVVIFLCPAVIVPH 533
+ +FVS C F +++ L VI+PH
Sbjct: 39 LLTFFVSLCVFLSIILPLIFLVIIPH 64
>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 138 PLQFFISKPSFSNFVKIISVISTAVFPLVSTKSINDS 28
PL F+++ + N V+ + + + VFP+ T +N+S
Sbjct: 50 PLDGFMNQKDYLNVVENLRLSTGEVFPIPITLDLNES 86
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = -2
Query: 345 NTGRANNGRANKSRANKGRAIEWSMSTSARDGCLYRNGASIGMINASLNTAVLS 184
+TG + G + + +I W+ STSA + +S S+N+ + S
Sbjct: 142 STGSVSGGSVYPTNSTTNSSISWNSSTSAATNTSSSSSSSSQSSVVSVNSEIFS 195
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 369 HLVGRCTTNTGRANNGRANKSRANKGRAIEWS 274
HL GR T N+ KS A K + + W+
Sbjct: 858 HLSGRTTRNSASPGIVSGKKSYAKKDQVLSWA 889
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 356 LPTKCSSWKFLFVLFPFVISVFVVHL 433
LP + +L+VLF + IS+F++++
Sbjct: 189 LPQPGDGFLYLYVLFTYFISIFLLYV 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,402
Number of Sequences: 5004
Number of extensions: 38067
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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