Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8a21
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)                   32   0.50 
SB_29582| Best HMM Match : SAC3_GANP (HMM E-Value=0)                   31   0.66 
SB_12465| Best HMM Match : Ery_res_leader2 (HMM E-Value=2.7)           30   1.5  
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_58403| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_22870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)        28   6.1  
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  28   8.1  
SB_4255| Best HMM Match : rve (HMM E-Value=1.4e-38)                    28   8.1  

>SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)
          Length = 836

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/39 (35%), Positives = 27/39 (69%)
 Frame = +1

Query: 91  HKKSVKADVIILGCSLSGIVAAHKLKRRFGDSMDIVVLD 207
           H + ++AD+I++G  +SG+ AA  L++  G  +D +VL+
Sbjct: 542 HTEELRADIIVIGGGISGLCAAKLLQQ--GHGVDTLVLE 578


>SB_29582| Best HMM Match : SAC3_GANP (HMM E-Value=0)
          Length = 337

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 238 YNVVFEDVEKDSQDIITEPDFQGTAKQMIENVARFYLAKYAKEFHVPLPD 387
           YN +F+ +    QD++ +     TA  ++E   RF++  + K   +P+ D
Sbjct: 87  YNFIFDRIRAIRQDMVIQRVADETAVSILEQATRFHILSHHKLAGMPIED 136


>SB_12465| Best HMM Match : Ery_res_leader2 (HMM E-Value=2.7)
          Length = 712

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 409 VRTRLTKLFQHQNGNTVECTNDFHEFDYLSVMERFEINQYQNMLDQSMK-DLFQRHKVDL 585
           + +  T LF+  NG  V+   D  EF+  ++M      +   + D + K D  QR K  +
Sbjct: 303 IESEETSLFKINNGQHVKMAGDVSEFNITAMMHELVSGEKYKLPDDTAKPDKQQRQKATI 362

Query: 586 Q 588
           Q
Sbjct: 363 Q 363


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 343 YLAKYAKEFHVPLPDVIIAPERVRTRLTKLFQHQNGNTVECTNDFHE 483
           YL  +  +F     D++    +V   + K     N N+ EC N++ E
Sbjct: 150 YLCNFENKFKTKKQDIVHRSHQVNKGIEKDMATHNANSAECLNEYGE 196


>SB_58403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 667 LETTMPPRI*LSHTRLIVVSLTYFFLLANLLCVSEISPSCSDLTC 533
           ++  +PPR     +R I V   Y+  L   L   +++ +CSD+ C
Sbjct: 9   MKAVLPPRAEGRRSREIEVCKKYYIRLLQFLATVDVTFACSDVIC 53


>SB_22870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 400 PERVRTRLTKLFQHQNGNTVECTNDFHEFDYLSVMERFEINQYQNMLDQSMKDLFQ-RHK 576
           P R RT  T      +  T++   +FH+ +Y++   RFE+    N+ +  +K  FQ R  
Sbjct: 116 PRRQRTTFT------SEQTLKLELEFHQNEYITRSRRFELAACLNLTETQVKIWFQNRRA 169

Query: 577 VDLQAERNRL 606
            D + E+ ++
Sbjct: 170 KDKRLEKAQM 179


>SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)
          Length = 613

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 154 AHKLKRRFGDSMDIVVLDLAGQTQSYSKYNVVFEDVEKD 270
           AHKL  + GD++D V+ DL     +  K++++F D  KD
Sbjct: 508 AHKLALKVGDAVD-VMTDL---KSAQEKFDIIFLDAAKD 542


>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 487 DYLSVMERFEINQYQNMLDQSMKDLFQRHKVDLQAERNRLRILRSDVYGKV 639
           D L  + R + + Y  ++DQS++DL QR +    A +  +  + S+V  K+
Sbjct: 640 DMLLKVGRDDFDHYIGLVDQSLRDLLQRLEGHETALKQAIESISSNVRTKL 690


>SB_4255| Best HMM Match : rve (HMM E-Value=1.4e-38)
          Length = 899

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +1

Query: 208  LAGQTQSYSKYNVVFED-----VEKDSQDIITEPDFQGTAKQMIENVARFYLAKYAKEFH 372
            L  QT+  +K + VFE      ++K    ++ E D  G  K  + NVA+  + K+ K   
Sbjct: 782  LLRQTRRENKLSPVFEPEAYKVLQKTGNAVVLE-DSDGNRK--MRNVAQ--MKKFIKPQE 836

Query: 373  VPLPDVIIAPERVRTRLTKLFQHQNGNTVECT 468
                DV+  P  +        + QN +T++CT
Sbjct: 837  AVAADVLPTPPEIAQEHQTAPETQNQSTLDCT 868


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,724,314
Number of Sequences: 59808
Number of extensions: 458494
Number of successful extensions: 1116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)