Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8a19
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)                    28   4.8  
SB_57324| Best HMM Match : ig (HMM E-Value=1e-26)                      28   6.4  
SB_5514| Best HMM Match : TB (HMM E-Value=4.3)                         28   6.4  
SB_41626| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_25463| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)                   28   6.4  
SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.5  

>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 3404

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 419  SNTLVFRTTKTSPALVCPISLASSSSVRLVQ 327
            SNTLV  +TKTS  LV  I L + +  ++ Q
Sbjct: 2691 SNTLVLLSTKTSVMLVLDIDLVAKTHTKVCQ 2721


>SB_57324| Best HMM Match : ig (HMM E-Value=1e-26)
          Length = 947

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -2

Query: 571 SNHHLLVGEHAVDQGPRHILERHRPLFALRADVALILHIIVFVELVYGNSEAI 413
           + HHL +    V    +++ + H     + A + LI+H+ V   +   N +A+
Sbjct: 473 NGHHLRIKNARVKDSGKYLCQAHNSFGMINASITLIVHLKVQAPVFRRNIKAL 525


>SB_5514| Best HMM Match : TB (HMM E-Value=4.3)
          Length = 243

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 254 IKADSSKDSIHQLWDFTGGIPTVVFALTELNSTMQVKWDRQ 376
           +K D S + +HQ+    G +P  +  +++L   + V W R+
Sbjct: 136 LKDDLSAEELHQIKYSNGHVPQFLRTMSQLKPELSVIWPRR 176


>SB_41626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 109 LFPFCDNNEFLNFIVE*RDIYS-VWTRSSDNSEIKSGMRRMYVSKHFSLYKG 261
           +  FC N + L+++ + RDIY   W   S++ +++     + VS  + + +G
Sbjct: 499 ILEFCANGDLLSYLKKKRDIYDPAWCAPSEDHDVQFTQMEL-VSAAYQVARG 549


>SB_25463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 405 HQSIASLLP*TSSTNTMMWRIRATSARSANRGRCLS 512
           HQ IAS LP T+S    M    +TS   +N   C+S
Sbjct: 205 HQRIASTLPVTASHPIYMQATPSTSGEPSNVNSCVS 240


>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
          Length = 1686

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 369  SHFTCIVEFSSVSANTTVGIPPVKSHSWWMLSLELSAFI 253
            S+FTC   +     N TVG  P   H  ++  L ++  +
Sbjct: 1469 SNFTCTCPYGYTGKNCTVGFKPEVEHRKYVYDLRIAVLL 1507


>SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 565 HHLLVGEHAVDQGPRHILERHRPLFALR 482
           H L  GEH  D GP H+L++   L   R
Sbjct: 496 HSLEQGEHYTDSGPYHLLKQGETLHRQR 523


>SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -3

Query: 411 FGVSDNKNFTGTCLSHFTCIVEFSSVSA----NTTVGIP 307
           +G +D     GTCLSH  C ++  S ++    N TV +P
Sbjct: 27  WGKADLDKSVGTCLSHRVCALDTWSAASRPVWNQTVSVP 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,673,626
Number of Sequences: 59808
Number of extensions: 380652
Number of successful extensions: 960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)