Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8a19
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    27   9.7  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    27   9.7  

>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
           trithorax-related protein LIN-59 protein.
          Length = 1312

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 236 ANTLVYIKADSSKDSIHQLWDFTGGIPTVVFALTELNSTMQVKWDR 373
           +N   +IK     +S  ++W   G     VFAL++LN   ++  D+
Sbjct: 704 SNIARFIKHSCKPNSRLEVWSVNGFYRAGVFALSDLNPNAEITVDK 749


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
           lineage protein 59 protein.
          Length = 1312

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 236 ANTLVYIKADSSKDSIHQLWDFTGGIPTVVFALTELNSTMQVKWDR 373
           +N   +IK     +S  ++W   G     VFAL++LN   ++  D+
Sbjct: 704 SNIARFIKHSCKPNSRLEVWSVNGFYRAGVFALSDLNPNAEITVDK 749


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,553,467
Number of Sequences: 27780
Number of extensions: 280918
Number of successful extensions: 745
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)