Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8a18
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              90   2e-18
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               29   2.6  
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        29   3.4  
SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9)                      29   3.4  
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 29   4.5  
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)                      29   4.5  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   6.0  
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    28   7.9  
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                28   7.9  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 54/133 (40%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
 Frame = +1

Query: 274 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPW----RDDTEE 441
           E   +E KFY EVHA               R  I +G  EP D+EC  P      D+ EE
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEECRWPSDAEDEDEAEE 200

Query: 442 EELARAVQNAAIT-EGEEK---KDDKAIEPPMDP-NVKGIPDFWYNIFRNVSMLSEMMQE 606
           +E   A + + ++ E EEK    D++ IE    P + KGIP+FW    +NV +LSEM+QE
Sbjct: 201 KEEKEATEVSKLSGEVEEKVKIDDEEKIETEQLPEDTKGIPEFWLTAMKNVELLSEMIQE 260

Query: 607 HDEPILKCLQDIK 645
           HDEPILK L D++
Sbjct: 261 HDEPILKHLHDVR 273


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 505 KAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDE 615
           + I+PP+ P  K +PD   ++ R  + LS  + EH+E
Sbjct: 156 RKIKPPVPPKPKVMPDRAASLSRQSASLSRRIPEHNE 192


>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 421 WRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKG-IPDFWYNIFRNVSMLSEM 597
           +R   ++EE   A QN+ I   + +  D  I      N+KG + D W  I +  S L  +
Sbjct: 215 YRRSAKKEEQKEAAQNSKILALQSQVSDLGIAMEAGLNIKGEVTDGWNEIKKAASGLRYI 274

Query: 598 MQEHDE 615
           + + DE
Sbjct: 275 IFKMDE 280


>SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9)
          Length = 238

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 421 WRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIP-DFWYNIFRNVSMLSEM 597
           W+     E   R ++NA +   +  K+ KA++P +D +    P    Y   + +   +EM
Sbjct: 38  WKLPIPAELTTRTIRNAQVWYQDTSKETKAVDPSLDSSSSSEPMQQLYLQQQQIKTAAEM 97

Query: 598 MQEHDEPILKCLQDIKS 648
            + H    +K + D+ S
Sbjct: 98  EKNH----VKLVHDVNS 110


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 226 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 128
           V +PS +HE D   PL F +GS +  T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
          Length = 1119

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +1

Query: 475 ITEGEEKKDDKA-IEPPMDPNV--KGIPDFWYNIFRN 576
           +TE +E+K+DKA IE    P +    +  ++YN FRN
Sbjct: 371 VTENKEEKEDKAKIEDSQTPEIFSHSLDLYFYNEFRN 407


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 385 TYEPNDDECLNPWRDDTEEEEL 450
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 388 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 483
           +  N D+C+N   +  T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500


>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 447 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 307
           LFF   +T    +F +  FI   +     F K +   F++ F CMYF
Sbjct: 13  LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,289,563
Number of Sequences: 59808
Number of extensions: 414884
Number of successful extensions: 1125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)