Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8a12
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)               30   1.5  
SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)           30   1.5  
SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0)                 29   2.5  
SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_47750| Best HMM Match : Metallothio (HMM E-Value=9)                 29   4.4  
SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
          Length = 131

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +3

Query: 450 YSYRLSRRHSTILLLAFLIATVTLILHLYAYRHQE 554
           + +R  + H +I+++   I+T+TL+LH Y + H++
Sbjct: 25  HHHRHHQHHPSIIIIIITISTITLVLH-YHHHHRQ 58


>SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)
          Length = 525

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 141 VFGSRKFSTRFFRILCLGYGHECV*NVMF*VKLLLKNELTQYNK 272
           +FG  KF    F  LC+ Y +E +    F V  + KNE  +Y++
Sbjct: 74  IFGFEKFDMNSFEQLCINYANENL--QQFFVAQIFKNEQEEYDR 115


>SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 650

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 102 KKN*QCLWLVVHFVFGSRKFSTRFFRILCLGYGHECV*NVMF*VKLLLKNELTQYNK 272
           K++ +C  + V  ++G   F T  F  LC+ Y +E +  +   ++L+LK E  +Y +
Sbjct: 359 KEHGKCTVIGVLDIYGFEIFETNSFEQLCINYCNEKLQQLF--IELVLKEEQEEYQR 413


>SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 141 VFGSRKFSTRFFRILCLGYGHECV*NVMF*VKLLLKNELTQYNK 272
           +FG   F    F  LC+ Y +E +    F VK + K E  QY+K
Sbjct: 394 IFGFENFDINSFEQLCINYANEHL--QQFFVKHIFKLEQEQYDK 435


>SB_47750| Best HMM Match : Metallothio (HMM E-Value=9)
          Length = 191

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 153 YCQIQNEPQATDTVNFFCIFSYFTIA*FLNS 61
           YC++Q+ P A  TV  F   ++F +   +NS
Sbjct: 85  YCELQSTPSALSTVETFAELTWFVLTNQMNS 115


>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 483 SSNVFGSICMNKHRISVG-ISSFFTHIFIPPNS 388
           + N+ GS+C+N  R++ G +   +  I I P+S
Sbjct: 536 TKNILGSLCVNPGRLAKGQVGGTYARILIQPDS 568


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,597,254
Number of Sequences: 59808
Number of extensions: 395212
Number of successful extensions: 881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)