Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8a12
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-10|CAB04570.1|  180|Caenorhabditis elegans Hypothetical p...    29   3.9  
AC024761-14|AAM97970.1|   98|Caenorhabditis elegans Peroxiredoxi...    27   8.9  
AC024761-13|AAP13758.1|  353|Caenorhabditis elegans Peroxiredoxi...    27   8.9  
AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxi...    27   8.9  

>Z81564-10|CAB04570.1|  180|Caenorhabditis elegans Hypothetical
           protein K05C4.10 protein.
          Length = 180

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 350 WIFF-LTNTQNADTELGGMKMCVKNDEMPTDIRCLFIQIEPKTFDD 484
           W+ F LT  +  ++ +G   +  K   +  + R LF+ +E KTF +
Sbjct: 68  WVLFILTENEERESRMGQGNLAEKYISLRENERLLFLDLEKKTFGE 113


>AC024761-14|AAM97970.1|   98|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform b protein.
          Length = 98

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 486 LLLAFLIATVTLILHLYAYRHQEPEQLQTS 575
           + L F I    + +H+Y +RHQ  E   TS
Sbjct: 39  IFLVFFIYGCVIFVHIYGHRHQIREAYHTS 68


>AC024761-13|AAP13758.1|  353|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform c protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 486 LLLAFLIATVTLILHLYAYRHQEPEQLQTS 575
           + L F I    + +H+Y +RHQ  E   TS
Sbjct: 60  IFLVFFIYGCVIFVHIYGHRHQIREAYHTS 89


>AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform a protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 486 LLLAFLIATVTLILHLYAYRHQEPEQLQTS 575
           + L F I    + +H+Y +RHQ  E   TS
Sbjct: 60  IFLVFFIYGCVIFVHIYGHRHQIREAYHTS 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,229
Number of Sequences: 27780
Number of extensions: 319664
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)