Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8a11
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37659| Best HMM Match : Motilin_ghrelin (HMM E-Value=3.2) 31 0.69
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_44782| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_37389| Best HMM Match : Protamine_P1 (HMM E-Value=0.33) 29 4.9
SB_27399| Best HMM Match : Ribosomal_S26e (HMM E-Value=6.3) 29 4.9
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 28 8.5
SB_28437| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_19016| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_37659| Best HMM Match : Motilin_ghrelin (HMM E-Value=3.2)
Length = 468
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 406 KRSPEEQA-KVEARKMVKLKKQRDAEIRKALAEAVEDI 516
KRSPE+ K E +M+KLK R E+ AE EDI
Sbjct: 130 KRSPEKPPLKPEVEEMIKLKVSRAFELETNPAEETEDI 167
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 397 IIKKRSPEEQAKVEAR-KMVKLKKQRDAEIRKALAEAVEDICK 522
I KK+ EEQAK E R K+ K KQR + + + +A +++ K
Sbjct: 1320 ITKKKLQEEQAKREERNKLFKELKQRKISVDEEVEQAKDELMK 1362
>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -3
Query: 389 TKGSQSTYGSSFGAISVRSFNGLTFAPGVSAAFHSHPILAGTGKPGLKNMHG 234
T G G+ GA+ R + GLT + G A + TG+PG + G
Sbjct: 242 TPGKNGRPGAK-GAMGPRGYRGLTGSKGARGARGKQGLRGATGRPGRNGVPG 292
>SB_44782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 396 DYQEAQPRGASESG--STEDGQAEEAARRRNPK 488
D Q A+PR AS S GQA++AARR+ K
Sbjct: 127 DKQAARPRQASRKAKPSKPQGQAKQAARRKTSK 159
>SB_37389| Best HMM Match : Protamine_P1 (HMM E-Value=0.33)
Length = 273
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 586 DNCL*PYRWQLDHYNRHPYR 527
+NCL +WQ DHYN+ R
Sbjct: 40 NNCLSGIKWQTDHYNKESER 59
>SB_27399| Best HMM Match : Ribosomal_S26e (HMM E-Value=6.3)
Length = 159
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +1
Query: 385 LVFKIIKKRSPEEQAKVEARKMVKLKKQRDAEIRKALAEAVEDICKCAYMDVYCNDLTAI 564
L + + R E + AR++V K RD R+ + + D YC L
Sbjct: 24 LTKRACRTRGQPEPGTINARRIVNPLKWRDRYCRQLTIRDKVMVTPLKWRDHYCRQLAIR 83
Query: 565 DKVI 576
DKV+
Sbjct: 84 DKVM 87
>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 301 DTPGAKVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRSPEE-QAKVEARKMVKLKKQRDA 477
DTP V PL++ T+ ++ PL K+ K R+ E+ K E + KLK R A
Sbjct: 788 DTPETGVQPLENGTDEPVKRGYKMEHRPLKLKLGKDRNKEQGHEKSEFEESEKLKGIR-A 846
Query: 478 EIRKALAEAVED 513
+ + +E ED
Sbjct: 847 VLNEVKSEKKED 858
>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +3
Query: 411 QPRGASESGSTEDGQA---EEAARRRNPKGPGRSRRRHLQ 521
QPR E G ++G+ EEA KG G RRR +
Sbjct: 140 QPRSEGEEGEEKNGEVREGEEAEGEEGQKGDGPRRRRRFR 179
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +1
Query: 307 PGAKVNPLKDLTEIAPNEDPYV-DCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQRDAEI 483
P ++ + D E + PY CD L+ I R P +QA +E + K R +
Sbjct: 4046 PYSQFDVTLDKKERKKPDGPYCRHCDVLIIGIGVTRDPIDQADIEQNEQSAQKDFRVQSV 4105
Query: 484 RKALAEAVEDICKCAYMDVYCNDLTA 561
++ + C A + Y + L A
Sbjct: 4106 NVEAGDSRDAFCSEACLKQYYSHLEA 4131
>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
Length = 924
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 400 IKKRSPEEQAKVEARKMVKLKKQRDAEIRKALAEAV 507
++KR E+Q + E +K + +KQR AE+R+ +A+
Sbjct: 668 LQKRQQEQQRQQELQKRQQEEKQRMAEMRQQQQQAL 703
>SB_28437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 410 AAPRSKRKWKHGRWSS*RSSETQKSERP 493
A PRS +K H ++S R+SE +++RP
Sbjct: 48 ALPRSSKKGTHPPFASWRNSEEARTDRP 75
>SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 253 PGLPVPAKMGWLWNAAD 303
P LP P K GW WN D
Sbjct: 273 PVLPSPEKYGWKWNDGD 289
>SB_19016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 105 KLPIGPWSGPTQQF*LLYTLKFYFVTRYIV 16
K I W PT + L+YT+ F F+ +YI+
Sbjct: 115 KFCIEDWPAPTATYRLIYTV-FIFIAQYII 143
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 SQNG-VAVECGRHSWSEG*SIERSDRDSTERGSIC 371
SQ+G AV C +W+ G +E++DR+ +R C
Sbjct: 346 SQHGRFAVTCDASNWAIGYYLEQTDREGVKRPKEC 380
>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 526 AYMDVYCNDLTAIDKVIDSCPAFKEP 603
+Y + +DLT I+K + CPA K P
Sbjct: 130 SYALITVDDLTFIEKYVAECPALKAP 155
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,638,305
Number of Sequences: 59808
Number of extensions: 443728
Number of successful extensions: 1468
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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