Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8a07
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)               32   0.38 
SB_27170| Best HMM Match : RVT_1 (HMM E-Value=1.3e-31)                 32   0.38 
SB_8622| Best HMM Match : RVT_1 (HMM E-Value=1.8e-35)                  32   0.38 
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)                        32   0.38 
SB_5427| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_44579| Best HMM Match : Sialidase (HMM E-Value=8.3)                 29   2.7  
SB_57064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)
          Length = 294

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 296 KLWKMLKLSPIPKLGESRIFFDLDPTFAFVAVSGL 400
           KLWK+ ++SPIPK+ E R   D  P      +S L
Sbjct: 215 KLWKIARISPIPKVNEPRCDADHRPVSILPTLSKL 249


>SB_27170| Best HMM Match : RVT_1 (HMM E-Value=1.3e-31)
          Length = 265

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 296 KLWKMLKLSPIPKLGESRIFFDLDPTFAFVAVSGL 400
           KLWK+ ++SPIPK+ E R   D  P      +S L
Sbjct: 32  KLWKIARISPIPKVNEPRCDADHRPVSILPTLSKL 66


>SB_8622| Best HMM Match : RVT_1 (HMM E-Value=1.8e-35)
          Length = 308

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 296 KLWKMLKLSPIPKLGESRIFFDLDPTFAFVAVSGL 400
           KLWK+ ++SPIPK+ E R   D  P      +S L
Sbjct: 32  KLWKIARISPIPKVNEPRCDADHRPVSILPTLSKL 66


>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 471

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 296 KLWKMLKLSPIPKLGESRIFFDLDPTFAFVAVSGL 400
           KLWK+ ++SPIPK+ E R   D  P      +S L
Sbjct: 264 KLWKIARISPIPKVNEPRCDADHRPVSILPTLSKL 298


>SB_5427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 332 KLGESRIFFDLDPTFAFVAVSGLGSECLTYNVSEQLDENKE 454
           KLG+S+ F+ +D  +  V   GLG +   ++V E+  E KE
Sbjct: 73  KLGKSKAFYGIDTDYPCVVAVGLGKK--DHSVDEETIEEKE 111


>SB_44579| Best HMM Match : Sialidase (HMM E-Value=8.3)
          Length = 172

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 56  LEYCFFRKSLVLKHVRYISQFKIQRTDCVPYGTPRKIKDPKLCGHKDKGLVL 211
           +EY  F  S+VLK VR ++++  +RTD        K  + +  G    GL+L
Sbjct: 7   IEYVLFCFSIVLKKVRSLARYHQKRTDVTKNAPHFKPSEMQASGKTVLGLLL 58


>SB_57064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 446 NKEAIRIAAGVGAISLQPLNPKAIHLE 526
           N E++RIA  +  +++  LNP+A+ +E
Sbjct: 157 NPESVRIAQEITEVNIHKLNPEAVWIE 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,828,502
Number of Sequences: 59808
Number of extensions: 479979
Number of successful extensions: 970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)