Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8a05
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0039 - 40667598-40669880 38 0.006
03_02_0187 - 6248226-6249226,6249296-6250148 36 0.024
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 30 2.1
11_01_0672 - 5485017-5485111,5485187-5485408,5488704-5488893,548... 29 2.7
11_01_0619 - 4961588-4962409 29 2.7
04_03_0803 - 19835284-19836050,19836337-19836418 29 2.7
07_03_1000 - 23220878-23221821,23222164-23223001 28 6.3
06_01_0351 + 2537022-2538281 28 6.3
03_05_1150 - 30758981-30759778,30759970-30760729,30760823-307609... 28 8.3
>01_07_0039 - 40667598-40669880
Length = 760
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/68 (35%), Positives = 38/68 (55%)
Frame = -2
Query: 603 ADISTSIKPSSELGRITSL*FSSVSIRIRGSSLPFMAIRTSTLRRSSKPNADCSSLLTSS 424
AD ST P++ELGR++SL ++ +++P A +T RS DCS++ +SS
Sbjct: 156 ADRSTHDYPNAELGRLSSLEADCNAVAGISNNVPSYAQQTD---RSCLDVGDCSNVASSS 212
Query: 423 RNNSKDSC 400
+ DSC
Sbjct: 213 KTKRTDSC 220
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 36.3 bits (80), Expect = 0.024
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Frame = +2
Query: 281 QIWPQPRGAISLSTTAVPVHADSFRLKILLTPSRTVQEYLQESFELFREDVKRLEQSAFG 460
Q+WP+P S P+ + SF ++ +L+ ++++ + L R +
Sbjct: 47 QVWPKPTSISWPSAVYAPL-SPSFSVRAVLSHP-SLRQAVAFYTRLIRAERHAPLVPPAN 104
Query: 461 FEERRSVLVRIAINGSEDPRMRID--TEENYKLVIRPNSDDGLMLVDISASTFCGARHGL 634
+ R V VR DP + + +E+Y L + P+S DISA+T GA GL
Sbjct: 105 YTLSR-VPVRTLTLSVSDPDVPLGPAVDESYTLSVLPDSGSA----DISAATPWGAIRGL 159
Query: 635 ETLIQLIW 658
ET QL W
Sbjct: 160 ETFSQLAW 167
>05_07_0173 + 28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +2
Query: 407 SFELFREDVKRLEQSAFGFEERRSVLVRIAINGSEDPRMRIDTEENYKLVIRPNSDDGLM 586
S ++FR + Q+ + R + + G + ++ IDT E +KLV + N+ DG+
Sbjct: 1450 SSDMFRNAFSVIHQTGEQGIDLREMSQALHPLGMQFVKVIIDTLEIFKLVFKVNAYDGVQ 1509
Query: 587 LVD 595
+VD
Sbjct: 1510 IVD 1512
>11_01_0672 -
5485017-5485111,5485187-5485408,5488704-5488893,
5488974-5489078,5489291-5489569,5489979-5490227
Length = 379
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 467 ERRSVLVRIAINGSEDPRMRIDTEENYKLVIRP 565
++ VL + S+D + I+TEENY ++++P
Sbjct: 197 KKSPVLENFTLQISKDTKSMIETEENYNVLVKP 229
>11_01_0619 - 4961588-4962409
Length = 273
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 179 WTWECINEKCVPSRPDPTNKLQS 247
WT+EC NE+ SRP T +L++
Sbjct: 105 WTYECKNERVYISRPSRTQQLKN 127
>04_03_0803 - 19835284-19836050,19836337-19836418
Length = 282
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 161 RSKNPLWTWECINE-KCVPSRPDPTNKLQSLETCNM-LCAGG-QIWPQP 298
++ + WT C + C P P P K ++ E C+ C GG +I P P
Sbjct: 151 QTSSTTWTGSCPTQCHCCPKPPPPETKTKACEYCSRDHCHGGCKITPPP 199
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 536 EENYKLVIRPNSDDGLMLVDISASTFCGARHGLETLIQLIWF 661
+E+Y L I P ++A+T GA GLET QL W+
Sbjct: 129 DESYALEILPAG----AAATVTAATAWGAMRGLETFSQLAWW 166
>06_01_0351 + 2537022-2538281
Length = 419
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 218 RPDPTNKLQSL-ETCNMLCAGGQIWPQ-PRGAISLSTTAVPVHADSFRLKILLTPSRT 385
+P PT + + E C+ G+ WP P + L +P HAD RL+ + P R+
Sbjct: 25 QPPPTQAIMATPEPCS-----GRPWPDLPSELLGLVLLRLPSHADRVRLRAVCRPWRS 77
>03_05_1150 -
30758981-30759778,30759970-30760729,30760823-30760920,
30761997-30762521
Length = 726
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 275 GGQIWPQPRGAISLSTTAVPVHADSFR 355
GG IW Q R A+S + + VHA R
Sbjct: 404 GGDIWRQSRSAMSSAAAKMDVHAKLMR 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,790,570
Number of Sequences: 37544
Number of extensions: 437891
Number of successful extensions: 996
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -