Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8a05
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05) 31 0.91
SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59) 30 1.6
SB_30116| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_14164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_52198| Best HMM Match : Folate_rec (HMM E-Value=0) 29 4.9
SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06) 29 4.9
SB_46783| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0017) 28 6.4
SB_56989| Best HMM Match : DUF1103 (HMM E-Value=2.4) 28 8.5
SB_39414| Best HMM Match : rve (HMM E-Value=0.0011) 28 8.5
>SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)
Length = 662
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = -2
Query: 243 CNLFVGSGRDGTHFSLIHSQVHKGFLLLKLQLENVTRICNPSTR*YLDTSIIPQNIPSWK 64
CN F SG+D S + + + FLLL V +C Y+ T ++P +
Sbjct: 326 CNAFSLSGKDNV--SAVRREFSRAFLLLICCSSRVITLCRTRVLPYIVTRVLPYIVTRVL 383
Query: 63 HYLIFNII 40
Y++ ++
Sbjct: 384 PYIVTRVL 391
>SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)
Length = 810
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 539 LQYLYAFVDLHYHLWQSGRVHF 474
+ YLYA V LH +WQ+ R HF
Sbjct: 32 VSYLYALVVLHEFIWQAIRQHF 53
>SB_30116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 536 QYLYAFVDLHYHLWQSGRVHFAALRNQMLTVRV 438
+ L F+ H LW+SGRVH +R+ L V V
Sbjct: 174 ELLDVFLTNHPLLWKSGRVHKGLVRSDHLVVTV 206
>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2431
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 299 RGAISLSTTAVPVHADSFRLKILLTPSRTVQEYLQESFELFREDVKRLEQ 448
R ++S+S+ ++ +H S RL I L SR+V+E+ +LF V+ +
Sbjct: 458 RTSLSISSVSLRLHGTSSRLSIGL--SRSVREHCVREHQLFANVVREFRE 505
>SB_14164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 512 DPRMRIDTEENYKLVIRPNSDDGLML 589
DPR R DTEE+ K R +DD LM+
Sbjct: 443 DPRTRNDTEESPKSTPRNCADDNLMV 468
>SB_52198| Best HMM Match : Folate_rec (HMM E-Value=0)
Length = 583
Score = 28.7 bits (61), Expect = 4.9
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = -2
Query: 621 APQNVDADISTSIKPSSELGRITSL*FSSVS-IRIRGSSLPFMAIRTSTLRRSSKPNADC 445
+P A SI ++++ R+ L F+ V+ I I L + TST + S N+D
Sbjct: 233 SPTETVASTQNSITTATKMQRVL-LAFAVVACIAIGTQGLTKTCLSTSTAKTSPSSNSDV 291
Query: 444 SSLLTSSRNNSKDSCRYS*TVRDGVNNIFNLKESAC 337
S +NNS S ++ + V + N C
Sbjct: 292 FSACQVYQNNSCCSATFTQQLSSPVKGVGNFSWLQC 327
>SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)
Length = 273
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 337 YWHSGCGKAD-RSPWLRPNLTSCTQ-HVTC 254
+W GC D R PW R ++SCT H+ C
Sbjct: 203 WWLPGCRSCDDRDPWGREIVSSCTYGHMYC 232
>SB_46783| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0017)
Length = 322
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 500 LWQSGRVHFAALRNQMLTVRVF*HLPEIIQRTLV 399
LW+SGRVH +R+ L V V +P QR V
Sbjct: 249 LWKSGRVHKGLVRSDHLVVTVQPTIPTKPQRRYV 282
>SB_56989| Best HMM Match : DUF1103 (HMM E-Value=2.4)
Length = 835
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 119 LGLQILVTFSNCSFRSKNPLWTWE---CINEKCVPSR 220
+GL L+ F + RS + LW WE I+EK P+R
Sbjct: 542 IGLVDLIRFIHSPMRSGDILWGWEMAQAISEKINPNR 578
>SB_39414| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 269
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 371 TPSRTVQEYLQESFELFR-EDVKRLEQSAFGFEERRSVLVRIAINGSEDPRMRIDTEENY 547
T + + E+L +F + +V R + E R+ L ++ S DP + D + Y
Sbjct: 73 TKAENIIEFLDATFARYGYPEVLRTDNGPQFISEMRTKLPQLDFTAS-DPELARDRDREY 131
Query: 548 KLVIRPNSD 574
KL ++ ++D
Sbjct: 132 KLKLKKHAD 140
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,486,426
Number of Sequences: 59808
Number of extensions: 520898
Number of successful extensions: 1230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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