Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8a04
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)               30   1.6  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             29   4.8  

>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
 Frame = +3

Query: 168 SCRYKLS-RSFRTHCCCYCWNPCA---KPACCSNEYWCYTRHRPTSTLQETT-TLRRRDC 332
           +CRY L  R +    C Y  +PC    +P  C+     YT      TL+    TLR R  
Sbjct: 50  TCRYTLRPRRYTLSPCRYTLSPCRYTLRPRYCTLRPCRYTLRTCRYTLRPRHYTLRPRRY 109

Query: 333 LYQWRRNCLVPILFSYYYCSYILK*FKCRNR*C*YFL 443
             +  R  L P  ++   C Y L+   C  R C Y L
Sbjct: 110 TLRPCRYTLRPCRYTLRPCRYTLRPRYCTLRPCRYTL 146


>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
          Length = 863

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 273 TRHRPTSTLQETTTLRRRDCLYQWRRNCLVPILFSYYYC 389
           T+   T+T   TTT + R   YQ R+N    IL S+++C
Sbjct: 78  TKTTTTTTTTTTTTKQGRSSAYQ-RQNLFTIILISFFFC 115


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 315 LRRRDCLYQWRRNCLVPI 368
           +R RDCLY W  +C + +
Sbjct: 686 VRNRDCLYMWNESCAIEL 703


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,784,738
Number of Sequences: 59808
Number of extensions: 246826
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)