Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8a01
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    28   0.98 
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   1.7  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   4.0  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   5.2  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   5.2  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    25   6.9  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   6.9  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.9  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   6.9  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   6.9  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   9.1  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    25   9.1  

>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 39  LTQKIMEFFGITSHGPQNYIKECLRE 116
           LTQ++M+F G+   GP   + E  RE
Sbjct: 277 LTQRLMDFTGMNEFGPSRVVSEKNRE 302


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 195 TIQRPDVNTIRFIDCYIGRVNGFALGSIEIFKKMKRKGVIKPVGPSDMYRIPIT 356
           T++R  + TIR     I  +N   L  +  F+K    G+ K V  S+ YR+  T
Sbjct: 646 TLRRNRLATIRNARKSISTLNDRELLPVNFFEKKVNSGLYKSVERSENYRLGAT 699


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 341 VHIRRANWFNHTFPFHFFKYLNRS*CKSIHSPNVAVN 231
           ++IR  N  + TFP  +  +LN+S  K+    N+++N
Sbjct: 69  LNIRIENLHSETFPSDYTSFLNQSPKKNDFDDNMSLN 105


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 159 MKIIEQKSLLPKTIQRPDVNTI 224
           + ++ Q   LPK ++RPD+N +
Sbjct: 214 LTVLTQNPNLPKLLERPDINDL 235


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 516 FNFKIAKH-IYYFFELYLVLMCSVKLVVGIFFL 421
           FN+ I  + I +F   +LVL+C+V+  +  F L
Sbjct: 185 FNYAIGLYLICWFIFTFLVLLCTVRSTLAFFSL 217


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 433 YLFSNLYHEAFVTSASCIHHPYSIEVVMGILYISEGPTGLITPF 302
           Y F+   +    ++AS +     I  V+G LY SEG  GL   F
Sbjct: 261 YFFAKDENSKSKSAASLVKPKIGIRHVLGGLYKSEGLLGLFRGF 304


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +3

Query: 141 QDCVNLMKIIEQKSLLPKTIQRPDVNTIRFIDCYIGRVNGFALGSIEIFKKMKRKGVIKP 320
           +DC +++   ++K    K ++RP ++ +R       R+N          K    +GV+K 
Sbjct: 107 KDCSSVLLSDQEKRQFLKDLRRPGIDNLRRSQ-ICKRINDHCKKMRRCSKCDAMQGVVKK 165

Query: 321 VGP 329
            GP
Sbjct: 166 AGP 168


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 322 TGLITPFLFIFLNISIDPNANPFT 251
           T  + PF+ +FL I  D N +P +
Sbjct: 455 TSFLVPFMTVFLKILRDENGSPLS 478


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 96  IKECLREIYKEPMTKQDC 149
           I++ +RE  K+P+T+Q+C
Sbjct: 28  IEQVIRETSKDPVTQQEC 45


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 156 NLHNLVLSLAPYIFPVSTLLYNF 88
           NL  LV++++PY +PV+   +N+
Sbjct: 523 NLFALVVNVSPYTYPVTGPSFNY 545


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 180 IFVQLFSLNLHNLVLSLAPYIFPVSTLLYNFE 85
           +F+Q  SL   NL++SL P I       Y++E
Sbjct: 434 LFLQKSSLTEDNLIVSLVPKILAYLLDAYSYE 465


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 38  FDTENNGIFRNHFTWASKLYKR 103
           +DT NNG+++  F   ++ Y++
Sbjct: 176 YDTVNNGVYKTGFATTAEAYEK 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,345
Number of Sequences: 5004
Number of extensions: 50670
Number of successful extensions: 138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)