Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8a01
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)                42   4e-04
SB_10485| Best HMM Match : DUF1033 (HMM E-Value=0.19)                  28   4.1  
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)          27   9.5  
SB_23904| Best HMM Match : RdRP (HMM E-Value=0)                        27   9.5  

>SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)
          Length = 917

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +3

Query: 270 GSIEIFKKMKRKGVIKPVGPSDMYRIPITTSIEYGWWMQDAEVTNASWYKLEKRYPQPAS 449
           GS   + +   K +    GP+++Y   I+T+ EYGWWM+D  V + +W K  K +P   S
Sbjct: 672 GSYVKYTERLHKHIRPENGPNEIYDRKISTNYEYGWWMRDG-VQDEAWTK-NKNHPVVKS 729

Query: 450 PNT 458
             T
Sbjct: 730 EMT 732


>SB_10485| Best HMM Match : DUF1033 (HMM E-Value=0.19)
          Length = 294

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 318 PVGPSDMYRIPITTSIEYGWWMQD--AEVTNASWYKLEKRYPQPASPNTLILDKVR 479
           PVG  D   +PI+  +  GWW +     V +A    LEK+ PQ     + + D  R
Sbjct: 206 PVG-YDGNGLPISLQVMSGWWQEHKMLRVAHACENVLEKKQPQLGGLRSKLTDTSR 260


>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 822

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 475 TLSSINVFGEAGCGYLFSNLYHEAFVTSASCIHHPYSI 362
           T SS N+ G +G G+  + L H        C+   +SI
Sbjct: 757 TTSSSNLIGSSGAGWEGTALLHHGSYIKVGCVQFVFSI 794


>SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)
          Length = 729

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +3

Query: 264 ALGSIEIFKKMKRKGVIKPVGPSDMYRIPITTSIEYGWWMQDAEVTNASWYKLEKRYPQ 440
           A+ S+E  KK KR    +  GP+  +R P       G W   A++   SW+  E R  Q
Sbjct: 219 AVPSVERIKKNKRLKDSE-WGPNRNFRFPRYNGTG-GIWQSVADLLPRSWFHFENRVVQ 275


>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 1511

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = +3

Query: 39  LTQKIMEFFGITSHGPQNYIKECLREIYKEPMTKQDCVNLMKIIEQKSLLPKTIQRPDVN 218
           +TQ I+++  +   G  +   + L +  K+ +  ++C+ L +        PKT Q PD+N
Sbjct: 353 MTQYIVDYIRMDILGVIDNSHKALADKLKKGVQSEECLFLAEAHSYAVDAPKTGQWPDLN 412

Query: 219 TIRFIDCY 242
            ++    Y
Sbjct: 413 GLKLPKSY 420


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,028,779
Number of Sequences: 59808
Number of extensions: 332900
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)