Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7p21
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    29   0.15 
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    25   3.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    24   5.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        23   7.3  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    23   9.6  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    23   9.6  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    23   9.6  

>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 29.1 bits (62), Expect = 0.15
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 141 CTRLELPIRYKFLSXEXAIHXX*TQYLRFVLRFVYRLWP 25
           C    L +RY  L     IH     YL F +  + R+WP
Sbjct: 30  CALAFLTLRYTLLCYSIPIHIHTVNYLAFTIARMKRVWP 68


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 193 IFKALACKEARQSCKRVLYTPRAS 122
           IF A  CK+ +++  R+LYT  A+
Sbjct: 248 IFHAPTCKQVQKAYARLLYTDSAA 271


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 108 ICIELEALGVYXTRLQDCLASLQANALNICRKCL 209
           I + L  +G+   +L+D +  L   A ++C +CL
Sbjct: 344 IFLFLNVIGIAAYKLEDPVHRLFVTAFSVCCECL 377


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 204 IFDRYSKR*LVKKRDNLANE 145
           I DR S R  + KR+N ANE
Sbjct: 250 IMDRTSTRIQIPKRNNTANE 269


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 82  VNCXFXGKKFVSNWKL 129
           V   F GKK  SNWK+
Sbjct: 575 VKFDFYGKKVCSNWKV 590


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
 Frame = +3

Query: 126 ALGVYXTRLQDCLASLQANA--------LNICRKCLMLRDGR 227
           ALG+Y    QD  +  + NA        +NICR C+    G+
Sbjct: 314 ALGLYAMAYQDDKSFPKVNADIHMTSKYINICRDCIQAAKGK 355


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 95  SXERNLYRIGSSRRVQXSFAR 157
           S  ++ YR+ S RR + SFAR
Sbjct: 70  SESQSEYRLSSGRRSRASFAR 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 932,682
Number of Sequences: 5004
Number of extensions: 13788
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)