Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7p18
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    29   0.46 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   2.4  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   4.3  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.9  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.9  

>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 365 FSTFPSDDELYCARFTITPLTPD 297
           FSTF  DD  Y +RF+  P+ P+
Sbjct: 187 FSTFTIDDSRYLSRFSFPPMMPE 209


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 523 ATINYPFEKGPLSPRFRGEHALRRYPS 603
           +T  +P+ KG    RF   H+L R PS
Sbjct: 85  STSPFPYLKGSFDDRFSSTHSLTRQPS 111


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 554 HCRLGSEVNMLYVATLQEKKGALLVSCA 637
           H + G E+       LQ K+G  L+ CA
Sbjct: 513 HAKTGEELTSAIKVALQNKEGPTLIECA 540


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 340 SSSEGNVEKVYPQNIPGYKYVNAEEQ 417
           S+S  NV+++ PQN  G K  + EE+
Sbjct: 96  SNSLDNVQEINPQNTIGDKSAHTEEE 121


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +1

Query: 313 VIVKRAQYSSSSEGNVEKVYPQNIPGYKYVNAEEQDMSFRAMSDRAAQT 459
           ++  +AQ++ + E        + I GY   + +E  MS    ++ +A+T
Sbjct: 385 LVESQAQFTKNREATATPTEEEQIEGYDQEHTDELGMSRANTTEESAET 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,266
Number of Sequences: 5004
Number of extensions: 48239
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)