Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7p07
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    65   8e-12
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    51   1e-07
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   2.6  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   7.9  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    25   7.9  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   7.9  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 65.3 bits (152), Expect = 8e-12
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
 Frame = +2

Query: 410 LPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGCVAFIGVAIYFLSRP 589
           L  W QDN Y+  G+RPP  SF  C  SIF +H E+ NIWTHL G + F    ++F+ + 
Sbjct: 54  LEPWQQDNQYIISGYRPPSFSFYLCVKSIFHVHNESVNIWTHLFGAIVF----LFFIFKS 109

Query: 590 SIEIQ-----MQEKXXXXXXXXXXXXCLGFSFAYHTLYCHS 697
            + ++      ++              LG S  YHT+  HS
Sbjct: 110 ELILKRDTTTAEDVYVITVFLFSAFTMLGCSTFYHTISNHS 150


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +2

Query: 410 LPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGCVAFIGVAIYFLSRP 589
           LP    +N Y+ +G+R    S   CF SI   H ET NIWTHL   + F  V  YF    
Sbjct: 174 LPVQWHNNPYIIRGYRF-YTSKRKCFRSILSWHNETFNIWTHLSAFIVFFAVLAYFYPSS 232

Query: 590 S--IEIQMQEKXXXXXXXXXXXXCLGFSFAYHT 682
           S  +   +  +            CLG S  +HT
Sbjct: 233 SSWVSSNVSNRIVRIFFLLSAMKCLGCSVIWHT 265


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 224 CPLPSTPEDQHLLDAEMAEVLKAGVLSDEIDLGALAHNAA 343
           CPL  TP+ +HL+D ++   +K GV       G L    A
Sbjct: 206 CPL--TPDTEHLVDEKLLASMKKGVKIINTSRGGLVDTKA 243


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 167 SPHRDPILACVAIHRRT 117
           SPH +PILA  +  RRT
Sbjct: 334 SPHEEPILASTSADRRT 350


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 142 PASQSIGGHALGSNIRFHFPHLRLFQSREDG 50
           P S    G ALG   R+  PHLR    RE G
Sbjct: 161 PVSSRASG-ALGEKGRYIAPHLRAGSGRESG 190


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 110 QSVSSDGLRRRQGW-DPDAESL 172
           Q +  D +RR QGW  PD E+L
Sbjct: 354 QQIKEDEIRRAQGWFFPDKEAL 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,601
Number of Sequences: 5004
Number of extensions: 65025
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)