Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7p06
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 272 2e-73
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 270 5e-73
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 266 8e-72
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 266 8e-72
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 266 1e-71
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 265 2e-71
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 196 1e-50
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 196 1e-50
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 137 8e-33
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 135 2e-32
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 135 2e-32
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 133 1e-31
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 133 1e-31
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 132 2e-31
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 130 1e-30
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 130 1e-30
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 130 1e-30
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 129 2e-30
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 129 2e-30
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 129 2e-30
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 129 2e-30
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 128 5e-30
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 121 6e-28
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 107 1e-23
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 107 1e-23
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 105 4e-23
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical pr... 28 7.4
DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein. 28 7.4
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 272 bits (667), Expect = 2e-73
Identities = 126/190 (66%), Positives = 141/190 (74%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MREIVHVQ G+CGNQIG+KFWEVISDEHGI P G Y+G+SDLQLERINVYYNEA G KYV
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDLQLERINVYYNEANGGKYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PRAVLVDLEP TMDS+R GP+G ++RPDN V G SGAGNNWAKGHYTEGA+L++ VLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVV 120
Query: 488 RKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITAXXXXXXXXXXXXXXX 667
RKEAEGCDCLQGFQL H + + EEYPDRI +
Sbjct: 121 RKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSPKVSDTVV 180
Query: 668 XXYNATLSVN 697
YNATLSV+
Sbjct: 181 EPYNATLSVH 190
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 270 bits (663), Expect = 5e-73
Identities = 124/190 (65%), Positives = 138/190 (72%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MREIVH+Q G+CGNQIG+KFWEVISDEHGIDP G Y GDSDLQLERINVYYNEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQLERINVYYNEASGGKYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PRA LVDLEP TMDS+R GP+G ++RPDN V G SGAGNNWAKGHYTEGA+L++ VLDVV
Sbjct: 61 PRACLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVV 120
Query: 488 RKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITAXXXXXXXXXXXXXXX 667
RKEAE CDCLQGFQ+ H + + EEYPDRI
Sbjct: 121 RKEAESCDCLQGFQMTHSLGGGTGSGMGTLLISKIREEYPDRIMMTFSVVPSPKVSDTVV 180
Query: 668 XXYNATLSVN 697
YNATLSV+
Sbjct: 181 EPYNATLSVH 190
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 266 bits (653), Expect = 8e-72
Identities = 125/190 (65%), Positives = 138/190 (72%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MREIVH+Q G+CGNQIGSKFWEVISDEHGIDP G+Y GDSDLQLERINVYYNEA KYV
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAGSNKYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PRAVLVDLEP TMDS+R GP+G ++RPDN V G SGAGNNWAKGHYTEGA+L++ VLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVV 120
Query: 488 RKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITAXXXXXXXXXXXXXXX 667
RKEAE DCLQGFQL H + + EEYPDRI
Sbjct: 121 RKEAESTDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 668 XXYNATLSVN 697
YNATLSV+
Sbjct: 181 EPYNATLSVH 190
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 266 bits (653), Expect = 8e-72
Identities = 125/190 (65%), Positives = 138/190 (72%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MREIVH+Q G+CGNQIGSKFWEVISDEHGIDP G+Y GDSDLQLERINVYYNEA KYV
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAGSNKYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PRAVLVDLEP TMDS+R GP+G ++RPDN V G SGAGNNWAKGHYTEGA+L++ VLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVV 120
Query: 488 RKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITAXXXXXXXXXXXXXXX 667
RKEAE DCLQGFQL H + + EEYPDRI
Sbjct: 121 RKEAESTDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 668 XXYNATLSVN 697
YNATLSV+
Sbjct: 181 EPYNATLSVH 190
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 266 bits (651), Expect = 1e-71
Identities = 122/190 (64%), Positives = 140/190 (73%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MREIVHVQ G+CGNQIGSKFWEVISDEHGI P G ++G++DLQLERI+VYYNEA KYV
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLERIDVYYNEANNGKYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PRAVLVDLEP TMDS+R GP+G ++RPDN V G SGAGNNWAKGHYTEGA+L++ VLDV+
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVI 120
Query: 488 RKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITAXXXXXXXXXXXXXXX 667
RKEAEGCDCLQGFQL H + + EEYPDRI +
Sbjct: 121 RKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSPKVSDTVV 180
Query: 668 XXYNATLSVN 697
YNATLSV+
Sbjct: 181 EPYNATLSVH 190
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 265 bits (650), Expect = 2e-71
Identities = 122/190 (64%), Positives = 140/190 (73%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MREIVHVQ G+CGNQIGSKFWEVISDEHGI P G ++G+SDLQLERI+VYYNEA KYV
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQLERIDVYYNEANNGKYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PRAVLVDLEP TMDS+R GP+G ++RPDN V G SGAGNNWAKGHYTEGA+L++ VLDV+
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVI 120
Query: 488 RKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITAXXXXXXXXXXXXXXX 667
RKEAEGCDCLQGFQL H + + EE+PDRI +
Sbjct: 121 RKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMSSFSVVPSPKVSDTVV 180
Query: 668 XXYNATLSVN 697
YNATLSV+
Sbjct: 181 EPYNATLSVH 190
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 196 bits (478), Expect = 1e-50
Identities = 88/189 (46%), Positives = 122/189 (64%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
M+EI++VQVG+CGNQIG+KFWE IS+EHG+ G Y+GD+ QLERI YY E G KYV
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEGRKYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PRA+LVDL+P +++ +R YG ++ P+N V G SGAGNNW++G+Y +GA++++ VL V+
Sbjct: 61 PRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVDKVLSVI 120
Query: 488 RKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITAXXXXXXXXXXXXXXX 667
R+EAE D L+GFQL+H + L EEY D+ +
Sbjct: 121 RREAEAADSLEGFQLIHSLGGGTGSGLGSLLISKLREEYSDKTLSTCSIIPSAKVSDTVV 180
Query: 668 XXYNATLSV 694
YNA LS+
Sbjct: 181 EPYNAILSM 189
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 196 bits (478), Expect = 1e-50
Identities = 88/189 (46%), Positives = 122/189 (64%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
M+EI++VQVG+CGNQIG+KFWE IS+EHG+ G Y+GD+ QLERI YY E G KYV
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEGRKYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PRA+LVDL+P +++ +R YG ++ P+N V G SGAGNNW++G+Y +GA++++ VL V+
Sbjct: 61 PRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVDKVLSVI 120
Query: 488 RKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITAXXXXXXXXXXXXXXX 667
R+EAE D L+GFQL+H + L EEY D+ +
Sbjct: 121 RREAEAADSLEGFQLIHSLGGGTGSGLGSLLISKLREEYSDKTLSTCSIIPSAKVSDTVV 180
Query: 668 XXYNATLSV 694
YNA LS+
Sbjct: 181 EPYNAILSM 189
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 137 bits (331), Expect = 8e-33
Identities = 57/137 (41%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Frame = +2
Query: 131 REIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRY-QGDSDLQLERINVYYNEAFGAKYV 307
RE V + +G+ G QIG+ WE+ EHG+D G + + + + + + +++E+ K+V
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEKNKKQQSLQAFFSESMNGKHV 65
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PRA+ VDLEP+ +D IR G YG+++ PD ++ G A NN+A+GHYT G +L++ VLD +
Sbjct: 66 PRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELIDVVLDRI 125
Query: 488 RKEAEGCDCLQGFQLVH 538
RK+ E C+ LQGF + H
Sbjct: 126 RKQTENCEGLQGFLVFH 142
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 135 bits (327), Expect = 2e-32
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MRE++ + VG+ G QIG+ WE+ EHGI P G D E ++++ +YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTGNGRYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PR++ VDLEP+ +D IR G Y ++ P+ ++ G A NN+A+GHYT G +L++TVLD +
Sbjct: 61 PRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRI 120
Query: 488 RKEAEGCDCLQGFQLVH 538
R+ A+ C LQGF + H
Sbjct: 121 RRLADNCSGLQGFFVFH 137
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 135 bits (327), Expect = 2e-32
Identities = 57/137 (41%), Positives = 86/137 (62%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MRE++ + VG+ G QIG+ WE+ EHGI P G D E ++++ +YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTGNGRYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PR++ VDLEP+ +D IR G Y ++ P+ ++ G A NN+A+GHYT G +L++TVLD +
Sbjct: 61 PRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRI 120
Query: 488 RKEAEGCDCLQGFQLVH 538
R+ A+ C LQGF + H
Sbjct: 121 RRLADNCSGLQGFFVFH 137
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 133 bits (322), Expect = 1e-31
Identities = 57/137 (41%), Positives = 87/137 (63%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MRE++ + VG+ G QIG+ WE+ EHGI P G S + E ++++ +YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PR++ VDLEP+ +D IR G Y ++ P+ ++ G A NN+A+GHYT G +L++TVLD +
Sbjct: 61 PRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRI 120
Query: 488 RKEAEGCDCLQGFQLVH 538
R+ A+ C LQGF + H
Sbjct: 121 RRLADNCSGLQGFFVFH 137
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 133 bits (322), Expect = 1e-31
Identities = 57/137 (41%), Positives = 87/137 (63%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MRE++ + VG+ G QIG+ WE+ EHGI P G S + E ++++ +YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PR++ VDLEP+ +D IR G Y ++ P+ ++ G A NN+A+GHYT G +L++TVLD +
Sbjct: 61 PRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRI 120
Query: 488 RKEAEGCDCLQGFQLVH 538
R+ A+ C LQGF + H
Sbjct: 121 RRLADNCSGLQGFFVFH 137
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 132 bits (319), Expect = 2e-31
Identities = 59/139 (42%), Positives = 87/139 (62%), Gaps = 2/139 (1%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLE--RINVYYNEAFGAK 301
MREIV + +G+ G QIG+ WE+ EHGI P G D+ +E N +++E K
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 302 YVPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLD 481
+VPRA+ VDLEP+ +D +R G Y ++ P+ ++ G A NN+A+GHYT G +L++ V+D
Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGTYAKLFHPEQLISGKEDAANNYARGHYTIGKELIDVVMD 120
Query: 482 VVRKEAEGCDCLQGFQLVH 538
VR+ E C LQGF + H
Sbjct: 121 RVRRLTERCQSLQGFLIFH 139
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 130 bits (313), Expect = 1e-30
Identities = 56/139 (40%), Positives = 89/139 (64%), Gaps = 2/139 (1%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDL--QLERINVYYNEAFGAK 301
MRE++ + +G+ G QIG+ WE+ EHGI P G+ D L + + +++E +
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 302 YVPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLD 481
+VPRAV+VDLEP+ +D IR G Y S++ P+ ++ G A NN+A+GHYT G ++++ LD
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 482 VVRKEAEGCDCLQGFQLVH 538
+R+ A+ C LQGF + H
Sbjct: 121 RIRRLADNCTGLQGFLVFH 139
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 130 bits (313), Expect = 1e-30
Identities = 56/139 (40%), Positives = 89/139 (64%), Gaps = 2/139 (1%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDL--QLERINVYYNEAFGAK 301
MRE++ + +G+ G QIG+ WE+ EHGI P G+ D L + + +++E +
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 302 YVPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLD 481
+VPRAV+VDLEP+ +D IR G Y S++ P+ ++ G A NN+A+GHYT G ++++ LD
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 482 VVRKEAEGCDCLQGFQLVH 538
+R+ A+ C LQGF + H
Sbjct: 121 RIRRLADNCTGLQGFLVFH 139
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 130 bits (313), Expect = 1e-30
Identities = 56/139 (40%), Positives = 89/139 (64%), Gaps = 2/139 (1%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDL--QLERINVYYNEAFGAK 301
MRE++ + +G+ G QIG+ WE+ EHGI P G+ D L + + +++E +
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 302 YVPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLD 481
+VPRAV+VDLEP+ +D IR G Y S++ P+ ++ G A NN+A+GHYT G ++++ LD
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 482 VVRKEAEGCDCLQGFQLVH 538
+R+ A+ C LQGF + H
Sbjct: 121 RIRRLADNCTGLQGFLVFH 139
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 129 bits (312), Expect = 2e-30
Identities = 56/140 (40%), Positives = 89/140 (63%), Gaps = 2/140 (1%)
Frame = +2
Query: 125 RMREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLE--RINVYYNEAFGA 298
R RE++ + VG+ G Q+G+ WE+ EHGI P G + L ++ N +++E
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAG 64
Query: 299 KYVPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVL 478
K+VPRA++VDLEP+ +D IR G Y +++ P+ ++ G A NN+A+GHYT G ++++ V+
Sbjct: 65 KHVPRAIMVDLEPTPIDEIRTGTYKTLFHPEQLLTGKEDAANNYARGHYTIGKEIIDVVM 124
Query: 479 DVVRKEAEGCDCLQGFQLVH 538
D VR+ E C LQGF + H
Sbjct: 125 DRVRRLVENCRGLQGFLVFH 144
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 129 bits (311), Expect = 2e-30
Identities = 58/142 (40%), Positives = 89/142 (62%), Gaps = 2/142 (1%)
Frame = +2
Query: 119 YTRMREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDS--DLQLERINVYYNEAF 292
Y RE++ + VG+ G QIG+ WE+ EHGI P G + D D + E IN ++ E
Sbjct: 4 YKGSREVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETA 63
Query: 293 GAKYVPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLET 472
G K+VPR + VDLEP+ +D +R G Y S++ P+ ++ G A N +A+G YT G ++++
Sbjct: 64 GGKHVPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDV 123
Query: 473 VLDVVRKEAEGCDCLQGFQLVH 538
V+D V++ AE C+ LQGF + H
Sbjct: 124 VMDRVKRLAENCNGLQGFVIFH 145
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 129 bits (311), Expect = 2e-30
Identities = 54/137 (39%), Positives = 85/137 (62%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MRE++ + VG+ G QIG+ WE+ EHGI P G + + ++++ +YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PR++ VDLEP+ +D IR G Y ++ P+ ++ G A NN+A+GHYT G +L++T LD +
Sbjct: 61 PRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTTLDRI 120
Query: 488 RKEAEGCDCLQGFQLVH 538
R+ A+ C LQGF + H
Sbjct: 121 RRLADNCSGLQGFFVFH 137
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 129 bits (311), Expect = 2e-30
Identities = 54/137 (39%), Positives = 85/137 (62%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MRE++ + VG+ G QIG+ WE+ EHGI P G + + ++++ +YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRYV 60
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PR++ VDLEP+ +D IR G Y ++ P+ ++ G A NN+A+GHYT G +L++T LD +
Sbjct: 61 PRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTTLDRI 120
Query: 488 RKEAEGCDCLQGFQLVH 538
R+ A+ C LQGF + H
Sbjct: 121 RRLADNCSGLQGFFVFH 137
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 128 bits (308), Expect = 5e-30
Identities = 55/138 (39%), Positives = 88/138 (63%), Gaps = 2/138 (1%)
Frame = +2
Query: 131 REIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDL--QLERINVYYNEAFGAKY 304
RE++ + +G+ G QIG+ WE+ EHGI P G+ D L + + +++E ++
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRH 60
Query: 305 VPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDV 484
VPRAV+VDLEP+ +D IR G Y S++ P+ ++ G A NN+A+GHYT G ++++ LD
Sbjct: 61 VPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLDR 120
Query: 485 VRKEAEGCDCLQGFQLVH 538
+R+ A+ C LQGF + H
Sbjct: 121 IRRLADNCTGLQGFLVFH 138
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 121 bits (291), Expect = 6e-28
Identities = 53/137 (38%), Positives = 86/137 (62%)
Frame = +2
Query: 128 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 307
MRE++ + VG+ G QIG+ WE+ EHGI P G + D + ++++ ++V
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDGTSM-EPDGNSGSLGTFFSDTGYGRHV 59
Query: 308 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 487
PR++ VDLEP+ +D IR G Y ++ P+ ++ G A NN+A+GHYT G ++++T LD +
Sbjct: 60 PRSIFVDLEPTVVDEIRTGAYKKLFHPEQMLTGKEDAANNYARGHYTVGKEIIDTTLDRI 119
Query: 488 RKEAEGCDCLQGFQLVH 538
R+ A C+ LQGF + H
Sbjct: 120 RRLANNCEGLQGFFVFH 136
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 107 bits (256), Expect = 1e-23
Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Frame = +2
Query: 137 IVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYVPRA 316
++ V VG+CGNQ+ FW+ + DEHGI+ G+ + D+ ++ ++Y +A YVPRA
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFY-QADDDHYVPRA 65
Query: 317 VLVDLEPSTMDSIRGGP-YGSIYRPDNVVCG--ASGAGNNWAKGHYTEGADLLETVLDVV 487
VLVDLEP ++ + P + +++ DN+ GAGNNWA G Y +G ++ E ++D++
Sbjct: 66 VLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDII 124
Query: 488 RKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRI 616
+EAE + L G H L E +P ++
Sbjct: 125 IREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKV 167
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 107 bits (256), Expect = 1e-23
Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Frame = +2
Query: 137 IVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYVPRA 316
++ V VG+CGNQ+ FW+ + DEHGI+ G+ + D+ ++ ++Y +A YVPRA
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFY-QADDDHYVPRA 65
Query: 317 VLVDLEPSTMDSIRGGP-YGSIYRPDNVVCG--ASGAGNNWAKGHYTEGADLLETVLDVV 487
VLVDLEP ++ + P + +++ DN+ GAGNNWA G Y +G ++ E ++D++
Sbjct: 66 VLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDII 124
Query: 488 RKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRI 616
+EAE + L G H L E +P ++
Sbjct: 125 IREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKV 167
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 105 bits (251), Expect = 4e-23
Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Frame = +2
Query: 206 EHGIDPCGRYQGDS--DLQLERINVYYNEAFGAKYVPRAVLVDLEPSTMDSIRGGPYGSI 379
EHGI P G + D D + E IN ++ E G K+VPR + VDLEP+ +D +R G Y S+
Sbjct: 5 EHGIQPDGYHVEDDTYDEETETINTFFAETAGGKHVPRCLFVDLEPTVVDEVRTGTYRSL 64
Query: 380 YRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVVRKEAEGCDCLQGFQLVH 538
+ P+ ++ G A N +A+G YT G ++++ V+D V++ AE C+ LQGF + H
Sbjct: 65 FHPEQLLSGKEDAANCYARGRYTIGREMIDVVMDRVKRLAENCNGLQGFVIFH 117
>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
protein T21C9.2 protein.
Length = 1058
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 431 AKGHYTEGADLLETVLDVVRKEAEGCDCLQ 520
++G Y + + +ET LDV+ KE G C +
Sbjct: 407 SQGDYPKAIECIETSLDVLSKELNGVTCFR 436
>Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 672 GSTTVSETVGLGTTE-YVAVIRSGYSSVKLASSKXXXXXXXXXPREWTNWKPC 517
G+T+ ETV +GT E Y + GY + S+ T+W PC
Sbjct: 917 GTTSSQETVWIGTAEQYRKLHPQGYYPSRSPSAARSERSIEGSEFSMTSWSPC 969
>Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 672 GSTTVSETVGLGTTE-YVAVIRSGYSSVKLASSKXXXXXXXXXPREWTNWKPC 517
G+T+ ETV +GT E Y + GY + S+ T+W PC
Sbjct: 939 GTTSSQETVWIGTAEQYRKLHPQGYYPSRSPSAARSERSIEGSEFSMTSWSPC 991
>Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical
protein C52A11.4e protein.
Length = 2184
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 672 GSTTVSETVGLGTTE-YVAVIRSGYSSVKLASSKXXXXXXXXXPREWTNWKPC 517
G+T+ ETV +GT E Y + GY + S+ T+W PC
Sbjct: 730 GTTSSQETVWIGTAEQYRKLHPQGYYPSRSPSAARSERSIEGSEFSMTSWSPC 782
>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 672 GSTTVSETVGLGTTE-YVAVIRSGYSSVKLASSKXXXXXXXXXPREWTNWKPC 517
G+T+ ETV +GT E Y + GY + S+ T+W PC
Sbjct: 1037 GTTSSQETVWIGTAEQYRKLHPQGYYPSRSPSAARSERSIEGSEFSMTSWSPC 1089
>Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 672 GSTTVSETVGLGTTE-YVAVIRSGYSSVKLASSKXXXXXXXXXPREWTNWKPC 517
G+T+ ETV +GT E Y + GY + S+ T+W PC
Sbjct: 917 GTTSSQETVWIGTAEQYRKLHPQGYYPSRSPSAARSERSIEGSEFSMTSWSPC 969
>Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 672 GSTTVSETVGLGTTE-YVAVIRSGYSSVKLASSKXXXXXXXXXPREWTNWKPC 517
G+T+ ETV +GT E Y + GY + S+ T+W PC
Sbjct: 939 GTTSSQETVWIGTAEQYRKLHPQGYYPSRSPSAARSERSIEGSEFSMTSWSPC 991
>Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical
protein C52A11.4e protein.
Length = 2184
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 672 GSTTVSETVGLGTTE-YVAVIRSGYSSVKLASSKXXXXXXXXXPREWTNWKPC 517
G+T+ ETV +GT E Y + GY + S+ T+W PC
Sbjct: 730 GTTSSQETVWIGTAEQYRKLHPQGYYPSRSPSAARSERSIEGSEFSMTSWSPC 782
>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 672 GSTTVSETVGLGTTE-YVAVIRSGYSSVKLASSKXXXXXXXXXPREWTNWKPC 517
G+T+ ETV +GT E Y + GY + S+ T+W PC
Sbjct: 1037 GTTSSQETVWIGTAEQYRKLHPQGYYPSRSPSAARSERSIEGSEFSMTSWSPC 1089
>Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical
protein C52A11.4c protein.
Length = 2202
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 672 GSTTVSETVGLGTTE-YVAVIRSGYSSVKLASSKXXXXXXXXXPREWTNWKPC 517
G+T+ ETV +GT E Y + GY + S+ T+W PC
Sbjct: 748 GTTSSQETVWIGTAEQYRKLHPQGYYPSRSPSAARSERSIEGSEFSMTSWSPC 800
>DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein.
Length = 2166
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 672 GSTTVSETVGLGTTE-YVAVIRSGYSSVKLASSKXXXXXXXXXPREWTNWKPC 517
G+T+ ETV +GT E Y + GY + S+ T+W PC
Sbjct: 708 GTTSSQETVWIGTAEQYRKLHPQGYYPSRSPSAARSERSIEGSEFSMTSWSPC 760
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,068,246
Number of Sequences: 27780
Number of extensions: 268688
Number of successful extensions: 815
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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