Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7o15
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    31   0.23 
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    29   0.54 
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    29   0.72 
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    28   1.3  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    27   2.2  
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    27   2.9  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    27   2.9  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   2.9  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    26   5.0  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    26   5.0  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    26   5.0  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   8.8  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   8.8  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +2

Query: 479 PAKMMNGSAYSTPSRASYTPPKRNPVTGDGVPLTPLRRRHPAASLREG 622
           PA M +         A + P K N  TGDGVP +P     P+ S R G
Sbjct: 394 PAGMADWQQQQQQGAAYFDPSKMNQGTGDGVPFSP---SMPSGSSRGG 438


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +2

Query: 455 NGGSPTHSPAKMM------NGSAYSTPSRASYTPPKRNPVTGDGVP 574
           NG SPTHS +         NG+ +S  + +S +   RN VTG  +P
Sbjct: 93  NGASPTHSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLP 138


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +2

Query: 404 LITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRASYTPPKRNPVTGDGVPLTP 583
           ++ DT R  I+F DS +NG        K       +   R +    +R P+      +TP
Sbjct: 36  VMIDTTRGEIEFSDSAVNGTMDIEGAPKFAPAKTSAEKKRGAKPQMRRVPIPPH--RMTP 93

Query: 584 LRRRHP 601
           LR   P
Sbjct: 94  LRNVWP 99


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +2

Query: 254 AEIFNGDMTDGSPKKNGMARQRVVRDTPTRPRDTHSRLFGQAASNGPVSPLITDTIRSNI 433
           AE F+    D SPK       R    + TR R   S+ FG + SN P    + DT +S+ 
Sbjct: 508 AERFHSRSVDASPKAV-RRESRSFFPSLTRKR---SKFFGSSQSNSPKDSPLRDTHKSSD 563

Query: 434 QFGDSE 451
           +  +S+
Sbjct: 564 EHSESK 569


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 361 ETFRTGSEQWTRFSIDHRHH 420
           + F  G+ +W+ F I+H HH
Sbjct: 160 KAFYWGTSEWSAFEIEHAHH 179


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
 Frame = +2

Query: 242 KSCIAEIFNGDMTDGSPKKNGMARQRVVRDTPTRPRDTHSRLFGQAASNGPVSPLITDTI 421
           K  + ++ N ++ +     +   R  +VR+  T+P +++S+  G  +  G   P  T+ +
Sbjct: 46  KRIVKQLKNNELFNRLTLPSQELRDGIVRENQTKPSNSNSQSNGAISIRGIAGP--TNVV 103

Query: 422 RSNIQFGDSE-------MNGG-----SPTHSPAKMMNGSAYSTPSRASYTPPKRNPVTGD 565
             N+  G S        +N G         S  K+     +ST + A     K + VT D
Sbjct: 104 IENLAPGTSSDDVAATLLNFGEILNCQVNDSQGKVRASVRFSTLASAQQVVQKLDGVTAD 163

Query: 566 GVPLT 580
           G  L+
Sbjct: 164 GFKLS 168


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 255 QKSSMAI*QTAAPRRTAWRANVSSATHRR 341
           Q S   I   A P++  W+A+V+S+TH R
Sbjct: 207 QLSKNRIIVEAEPKKGLWQASVTSSTHER 235


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 515 PSRASYTPPKRN--PVTGDGVPLTPLRRRHP 601
           P R  YTP +    PVT   +P+TP+R   P
Sbjct: 47  PIRPVYTPTRTEITPVTLSPIPITPVREFQP 77


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 317 RVVRDTPTRPRDTHSRLFGQAASNGPVSPLITDTIRS--NIQF 439
           + V D     +DT SR+  +   NGP+S L+ D +R   NI F
Sbjct: 482 KCVVDIKGEKKDTPSRVVIEGVGNGPLSALV-DALRRQFNISF 523


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 404 LITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSA 505
           L+T +  + +  GD  MNG S     A +MN S+
Sbjct: 457 LLTGSWYNGVSIGDCIMNGHSTARKLASLMNSSS 490


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +2

Query: 350 DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRAS 529
           D  +R  G       V  L   + +SNI+         SPT SP +  +G+ +S+ S  S
Sbjct: 445 DDETRTVGTPTETISVVRLRRSSSQSNIEPNGVRSPTSSPTGSPIRRTSGNRWSSGSSHS 504

Query: 530 YTPPKRN 550
               +R+
Sbjct: 505 KKSAQRS 511


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +2

Query: 227 VPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVVRDTPTRPRDTHSRLFGQAASNGPVSPL 406
           V N  K  + +I +  +    PK + + +QR   D P   R T S   GQA S   +  +
Sbjct: 149 VANKTKLALQKILSKQIAQSQPK-SAVVQQR---DDPVYIRYTPSNQMGQALSKQRIIKM 204

Query: 407 IT 412
           +T
Sbjct: 205 VT 206


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 497 GSAYSTPSRASYTPPKRNPVTGDGVPLTPLRRRH 598
           GS  S PS+ASY  P   P       +T  RRRH
Sbjct: 346 GSPQSAPSKASYISPYARP------GITTSRRRH 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,383
Number of Sequences: 5004
Number of extensions: 66045
Number of successful extensions: 204
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)