Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7o09
         (255 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   4.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   7.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       19   7.2  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              19   9.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   9.6  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    19   9.6  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 49  DNVANTNPSNSRASQN 2
           DN+ NTN  N    +N
Sbjct: 421 DNIQNTNNQNDNNQKN 436


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 232 IFIL**MLKLRQWRL*RNLKLTDRV 158
           IFIL  M+ L  W    N  ++DR+
Sbjct: 10  IFILLQMIHLIAWASLENTGISDRL 34


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 8   RSTAIARIRVSNVVRFE 58
           RSTA AR+R+  V + E
Sbjct: 311 RSTAQARVRMQVVSQLE 327


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 29 IRVSNVVRFEPR 64
          +RVS V+  EPR
Sbjct: 33 VRVSPVITIEPR 44


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 93  EIASQGYQLR*EKKQQ*GRYCTTR 164
           E+A + +Q+R +KK +  R+   +
Sbjct: 844 EVAYKKHQIRKQKKMELARHAADK 867


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 201 RNFNIYYSI 227
           RNF+ YYS+
Sbjct: 13  RNFSCYYSL 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,632
Number of Sequences: 438
Number of extensions: 880
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4511484
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)