Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7o08
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    39   6e-04
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   2.5  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    27   3.3  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   5.8  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   7.7  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    25   7.7  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   7.7  

>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +2

Query: 503 RKNEFNKEFTTGS--IKCYDSNQLASNDPIEDTRCEAQCR-MTSG--LIMGVFDGHGG 661
           R  EF +  T     I  YD NQ+ASNDP ED   E   R +  G     G+FDGH G
Sbjct: 68  RLKEFERTVTVNKDGIFRYDFNQVASNDPCEDDHVEVIDRNIDEGNWYFWGIFDGHSG 125


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 437 AAQVQKDGVT-VLPSPQEVTTILRKNEFNKEFTTGSIKCYDSNQLASNDPIE 589
           A++++++GV  V   P  ++TIL  +E  ++     +KCY +N +     +E
Sbjct: 523 ASRIEREGVNRVKDFPSILSTILSVDEGVRQHREHMLKCYKNNPVPLEPLVE 574


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 623 SGLIMGVFDGHGGPACAQ 676
           S    G+FDGHGG  C++
Sbjct: 84  SPFFYGLFDGHGGTECSE 101


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 30  TCERIFKMRNLVPILK 77
           T E+IFK RN++PIL+
Sbjct: 109 TLEQIFKQRNVLPILQ 124


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 414 RVLDDVVFQNNVKFSLKYFFNIV 346
           RV   ++ QN V F   YFFN++
Sbjct: 80  RVSPGLIIQNMVSFHSTYFFNVL 102


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 642 TPI-IKPEVILHCASQRVSSMGSFEAS*FES*HLMEPVVNSLLNSFFRS 499
           TP+ + PE ++H  S + S   S   + +E    + P  N LL ++ R+
Sbjct: 194 TPVYMAPETLIHAVSYKESDWWSLGITFYECLFQVRPFPNHLLINWIRA 242


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 356 KKYFKENFTLFWNTTSSNTRYFHSSLKA 439
           +K  KE FT F+N  S +   FH SL A
Sbjct: 354 EKSNKEIFTAFFNICSDDGSVFHKSLCA 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,536
Number of Sequences: 5004
Number of extensions: 51177
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)