Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7o08
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0813 + 20774622-20774931,20775461-20775828,20776547-207767... 30 1.5
06_03_1262 - 28824736-28824906,28825297-28825371,28825530-288256... 30 2.0
03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816 29 2.6
02_01_0379 + 2744535-2744581,2744653-2744712,2745334-2745461,274... 29 2.6
05_02_0050 + 6109628-6109709,6109732-6109838 29 3.4
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 29 3.4
03_01_0263 + 2038139-2038445,2038610-2038618,2038759-2039126,203... 29 4.5
06_03_1411 - 29981153-29981407,29982072-29982308,29982975-299833... 28 6.0
04_04_1449 - 33683791-33683940,33684036-33684110,33684849-336849... 28 7.9
>10_08_0813 +
20774622-20774931,20775461-20775828,20776547-20776783,
20777717-20777968
Length = 388
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 557 SNQLASNDPIEDTRCEAQCRMTSGLIMGVFDGHGGPACAQ 676
+N L + +E G ++GV+DGHGGP A+
Sbjct: 53 NNLLEDHSQVESGPLSTTDPNLQGTLVGVYDGHGGPETAR 92
>06_03_1262 -
28824736-28824906,28825297-28825371,28825530-28825621,
28825741-28825827,28826049-28826207,28826314-28826412,
28826528-28826655,28827066-28827238
Length = 327
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 569 ASNDPIEDTRCEAQCRMTSGLIMGVFDGHGGPACAQ 676
+S + DTR + T GL GVFDGHGG A+
Sbjct: 75 SSMEDFYDTRIDGVDGETVGLF-GVFDGHGGARAAE 109
>03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816
Length = 392
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +2
Query: 572 SNDPIEDTRCEAQCRMT-SGLIMGVFDGHGGPACAQ 676
+N+ +ED +AQ ++ + ++GV+DGHGGP A+
Sbjct: 52 ANEALED---QAQVFVSPAATLVGVYDGHGGPEAAR 84
>02_01_0379 +
2744535-2744581,2744653-2744712,2745334-2745461,
2745553-2745651,2745742-2745900,2746125-2746211,
2746300-2746391,2746629-2746703,2746805-2746984
Length = 308
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 569 ASNDPIEDTRCEAQCRMTSGLIMGVFDGHGGPACAQ 676
AS + +TR + T GL GVFDGHGG A+
Sbjct: 53 ASMEDFYETRIDGVDGETIGLF-GVFDGHGGARAAE 87
>05_02_0050 + 6109628-6109709,6109732-6109838
Length = 62
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 482 QEVTTILRKNEFNKEFTTGSIKCYDSNQLASND 580
QE T+ +EF E+ I+CYD LAS D
Sbjct: 11 QEAATVWLSDEFTNEYN--EIRCYDRQYLASVD 41
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Frame = +2
Query: 602 EAQCRMTSG------LIMGVFDGHGGPACAQ 676
E QCR+ SG +GVFDGH GP A+
Sbjct: 73 EDQCRVESGPPPLAATCIGVFDGHAGPDAAR 103
>03_01_0263 +
2038139-2038445,2038610-2038618,2038759-2039126,
2039724-2039960,2040140-2040412
Length = 397
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 626 GLIMGVFDGHGGPACAQ 676
G +GV+DGHGGP A+
Sbjct: 75 GTFIGVYDGHGGPETAR 91
>06_03_1411 -
29981153-29981407,29982072-29982308,29982975-29983342,
29983448-29983604,29983646-29983708
Length = 359
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 626 GLIMGVFDGHGGPACA 673
G +GV+DGHGGP A
Sbjct: 46 GTFVGVYDGHGGPETA 61
>04_04_1449 -
33683791-33683940,33684036-33684110,33684849-33684940,
33685020-33685106,33685460-33685615,33685706-33685804,
33686180-33686307,33687355-33687416
Length = 282
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 569 ASNDPIEDTRCEAQCRMTSGLIMGVFDGHGGPACAQ 676
AS + +TR ++ GL GVFDGHGG A+
Sbjct: 38 ASMEDFYETRIDSVDGQIIGLF-GVFDGHGGAKVAE 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,040,019
Number of Sequences: 37544
Number of extensions: 275298
Number of successful extensions: 684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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