Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7o08
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57481| Best HMM Match : PP2C (HMM E-Value=2.9e-32)                  56   4e-08
SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)                 28   6.1  
SB_50513| Best HMM Match : Lig_chan (HMM E-Value=0.0083)               28   8.0  
SB_6317| Best HMM Match : RVT_2 (HMM E-Value=2.5e-14)                  28   8.0  
SB_43674| Best HMM Match : RVT_2 (HMM E-Value=2.5e-14)                 28   8.0  
SB_17510| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_57481| Best HMM Match : PP2C (HMM E-Value=2.9e-32)
          Length = 435

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
 Frame = +2

Query: 476 SPQEVTTILRKNEFNKEFTTGSIKCYDSNQLASNDPIEDTRCEAQ-CRMTSGLIMGVFDG 652
           S  EV  ++ + E + +  TG I  Y++NQLASN P+ED +   +      G + GV DG
Sbjct: 9   SDGEVNAMISRLEKSGKIDTGIIDRYETNQLASNQPMEDRKFVVRLLHQDGGYLFGVMDG 68

Query: 653 HGGPACA 673
           HGG ACA
Sbjct: 69  HGGNACA 75


>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
          Length = 1213

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 244  STLCKHCK*QLTVE*CRISKSTVITRVDYQ 155
            S +CKHCK Q+T +  RI +   ++ V  Q
Sbjct: 964  SKICKHCKTQITEDPPRIKREKGVSAVQLQ 993


>SB_50513| Best HMM Match : Lig_chan (HMM E-Value=0.0083)
          Length = 417

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 408 LDDVVFQNNVKFSLKYFFNIVCFTSEFNLKYVLTVFKSKFSFELFI 271
           L+D+V Q+ VK+ ++   ++  F SE  +    T+F+   S E F+
Sbjct: 316 LEDLVSQSTVKYGVQEGGSLFTFFSESKVDIYATMFQQMKSQETFV 361


>SB_6317| Best HMM Match : RVT_2 (HMM E-Value=2.5e-14)
          Length = 813

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +2

Query: 428 SLKAAQVQKDGVTVLPSPQEVTTILRKNEFNKEFTTGSIKCYDSNQLASNDPIEDTRCEA 607
           S+   Q Q DG+  LP  +E          N +    SI C D  Q A ++ +E    EA
Sbjct: 268 SVVEQQTQTDGL--LPGNEEAMLFQHPTTGNHDPVNASIPCVDGPQEAPDEEVEGPTGEA 325

Query: 608 Q 610
           +
Sbjct: 326 E 326


>SB_43674| Best HMM Match : RVT_2 (HMM E-Value=2.5e-14)
          Length = 813

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +2

Query: 428 SLKAAQVQKDGVTVLPSPQEVTTILRKNEFNKEFTTGSIKCYDSNQLASNDPIEDTRCEA 607
           S+   Q Q DG+  LP  +E          N +    SI C D  Q A ++ +E    EA
Sbjct: 268 SVVEQQTQTDGL--LPGNEEAMLFQHPTTGNHDPVNASIPCVDGPQEAPDEEVEGPTGEA 325

Query: 608 Q 610
           +
Sbjct: 326 E 326


>SB_17510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 456 MGSQYYLRLKKSQQYSEKTNSTKNSQLAPLSATIQI 563
           +G Q     K+S     ++NSTKN Q+ PLS   ++
Sbjct: 40  LGPQSNSSKKRSNSIFCRSNSTKNGQIPPLSVKFRL 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,426,106
Number of Sequences: 59808
Number of extensions: 349766
Number of successful extensions: 1002
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)