Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7o08
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    52   5e-07
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    29   3.1  
Z78415-1|CAB01671.1|  280|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U29515-1|AAC06328.1|  449|Caenorhabditis elegans fem-2 protein.        28   7.1  
U28412-8|AAC46598.1|  449|Caenorhabditis elegans Feminization of...    28   7.1  
AC024798-1|AAK29914.3|  722|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z69787-5|CAA93641.1|  129|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL032640-5|CAA21644.1|  475|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 24/59 (40%), Positives = 35/59 (59%)
 Frame = +2

Query: 500 LRKNEFNKEFTTGSIKCYDSNQLASNDPIEDTRCEAQCRMTSGLIMGVFDGHGGPACAQ 676
           LR +E +      +I   D+ QLA+N+PIED    A+C  +   + GVFDGHGG  C++
Sbjct: 25  LRAHERSANVEDDAIMRVDTCQLAANNPIEDFYSAAKCLSSRAFLFGVFDGHGGQQCSR 83


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 85
           protein.
          Length = 2203

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/53 (20%), Positives = 26/53 (49%)
 Frame = +2

Query: 443 QVQKDGVTVLPSPQEVTTILRKNEFNKEFTTGSIKCYDSNQLASNDPIEDTRC 601
           Q+Q+      P PQ        N+F ++  + +   +DS+ ++S+  + + +C
Sbjct: 140 QIQRQQPIAQPIPQHTIPPSTSNQFQQQIQSAASSIFDSSVISSHQKLYEEQC 192


>Z78415-1|CAB01671.1|  280|Caenorhabditis elegans Hypothetical
           protein C17G1.1 protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 424 LFLEGSASAKRWGHSITFASRSHNNTPKKRIQQRIHNWLH*VLRFKSTRF 573
           + L+G   A R GH I +   ++NN     I++ I +++   +R K T F
Sbjct: 131 VLLDGVYVASRKGHDIKYIFSTNNNNSTLDIREHIFSFMVPGIRQKRTTF 180


>U29515-1|AAC06328.1|  449|Caenorhabditis elegans fem-2 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 632 IMGVFDGHGGPACAQ 676
           ++ VFDGHGG  C+Q
Sbjct: 197 VLAVFDGHGGHECSQ 211


>U28412-8|AAC46598.1|  449|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 2 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 632 IMGVFDGHGGPACAQ 676
           ++ VFDGHGG  C+Q
Sbjct: 197 VLAVFDGHGGHECSQ 211


>AC024798-1|AAK29914.3|  722|Caenorhabditis elegans Hypothetical
           protein Y48G9A.10 protein.
          Length = 722

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 506 KNEFNKEFTTGSIKCYDSNQLASNDPIEDTRCEAQCRM 619
           + +F + + TGSI+ Y +++  +  P+    C+  C M
Sbjct: 538 QGKFTQTYETGSIRFYANSRTETVRPVTSASCKLVCAM 575


>Z69787-5|CAA93641.1|  129|Caenorhabditis elegans Hypothetical
          protein C44C10.6 protein.
          Length = 129

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 3  YYRSWTKVRTCERIFKMRNL 62
          YY+ WT+ + CE    +RNL
Sbjct: 29 YYKKWTREQLCEHAEPLRNL 48


>U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical
           protein F59A6.10 protein.
          Length = 155

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 531 VNSLLNSFFRSIVVTS*GEGNTVTPSFCTCAAFKEE 424
           +NS+L+ FF  I+V S  + +T    FC    F +E
Sbjct: 1   MNSILHRFFLVIIVISFCDADTCIDKFCPPGTFCDE 36


>AL032640-5|CAA21644.1|  475|Caenorhabditis elegans Hypothetical
           protein Y43F8A.5 protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 178 LYSSIFDTIRQSIVIYNACIT 240
           L SS+F  + QS++ Y ACIT
Sbjct: 12  LTSSVFFPVFQSLIFYKACIT 32


>AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical
           protein F56C3.2 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 151 ILVVRDSFN-LKYKIPNLKIHKQCCIFNIGT 62
           IL  R SF   K++ P +++H+   +FN+GT
Sbjct: 388 ILTSRSSFQEAKFQFPRIELHQISELFNLGT 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,797,273
Number of Sequences: 27780
Number of extensions: 283358
Number of successful extensions: 769
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)