Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7n16
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   3.1  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    26   4.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   4.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   5.4  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   7.2  
SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   9.5  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   9.5  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   9.5  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   9.5  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    25   9.5  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 425 SPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVK 526
           SP   TPT+ SP  K+P +  A  S +      K
Sbjct: 14  SPAMETPTKASPDSKSPNSVGAIPSSSPLASSTK 47


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 384 GEFFRLLAGERDGETLFFVCTGLVSRTLNLILPLRVD 274
           G F R+  GERDG+ ++ +C   V   L    P RVD
Sbjct: 245 GCFVRVKIGERDGQGVYRLCQ--VKGILESRKPYRVD 279


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 398 VSPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVK 526
           VSP   AKK  ++   + K P ++  + + +R   ++ P+ +K
Sbjct: 475 VSPKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENLK 517


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 401 SPAHPAKKSPNQRTPTRKSPSR 466
           SP H   +SP+ R P   SPSR
Sbjct: 73  SPHHGPVRSPSSRKPLPASPSR 94


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 401 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKP 529
           +PA P KK+P+   P R S + ++  +      P R  +   P
Sbjct: 42  TPAKPVKKAPSVVQPRRVSRTLRSSESVHTNHGPERVFESPTP 84


>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 422 KSPNQRTPTRKSPSRKTPTN 481
           K+P +   T+ +PSR  PTN
Sbjct: 27  KAPKKGAKTKSTPSRPKPTN 46


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 328 LHRTCLPNTQSNSTTTSRHTVILTE 254
           LH   + + +S S TTS+H   +T+
Sbjct: 131 LHENSISSKESPSVTTSKHVATITK 155


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 307 SGDKSGADKEKSFAVSFSRQKSKKLPSSKE 396
           SG KS ADK+  ++ S SRQ   ++ S  E
Sbjct: 567 SGLKSKADKDAEYSFSVSRQSIIQILSDVE 596


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 67 SNTILTPDNNKPSLGYKYRNT 5
          SN ILTP NN     Y+ R T
Sbjct: 2  SNLILTPSNNGTERPYRSRKT 22


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -2

Query: 523 YLFRSTSRRLASRKIGWGFSARRLSCWSSLVGRFFSRMRRRYLPC 389
           +L + T + + S  +GW    ++LS   + + + F++   + +PC
Sbjct: 13  HLVQKTIKVVESLGLGWKQLVKKLSNLMARIKKIFTQEELKQIPC 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,820
Number of Sequences: 5004
Number of extensions: 37762
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)