Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7n11
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    50   4e-07
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    27   2.3  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    27   3.0  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.0  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   4.0  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.0  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   9.3  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   9.3  

>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 22/67 (32%), Positives = 43/67 (64%)
 Frame = +2

Query: 347 YSIPGILHFIQHEWARFELERSQWEVDKAEFEARIAFLQGERKGQENLKNDLVRRIKMLE 526
           Y++ G++ ++Q+E  + E + + WE+++AE + R+A L+ ER   E   +   RR +MLE
Sbjct: 22  YTLQGVIQYLQYEAFKNERDHNLWEIERAELKIRVAQLERERAKLEQSLSFQQRRAEMLE 81

Query: 527 YALKQER 547
            +L++ R
Sbjct: 82  KSLRELR 88


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 392 RFELERSQWEVDKAEFEARIAFLQGERKGQENLKNDL-VRRIKMLEYALKQERAKFH 559
           RFE   SQW   +   E    +L G  KG E + N+   ++ + L YA    R   H
Sbjct: 117 RFEETYSQWNSGERSTEYVPVWLPGPEKGSETIINETRSQQSRWLAYAENVIRPLIH 173


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 337 LTGFFILFIIYTDSNLRSHLPSVVMRYGVIIHG 239
           +TGF+I  IIY    +  H P  + +   + HG
Sbjct: 192 ITGFYIFAIIYAAGGIPHHKPPNLFKEMPLAHG 224


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 313 IIYTDSNLRSHLPSVVMRYGVIIHGCRDFHDMATITELNLSH 188
           ++Y+ S L   L S+    G++I G  + +D A ITE  + H
Sbjct: 261 MVYSSSKL-GLLDSIKAELGIVIDGKIESNDAADITEKEILH 301


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 482 ENLKNDLVRR---IKMLEYALKQERAKFHKLKYGVELQQGDVRPPPEESAT 625
           ENLKNDL R+    +  +  L+++ A+ H+ K  ++L+   V    EE +T
Sbjct: 65  ENLKNDLKRKELEFEREQIELQRKLAEEHEQKNSLQLRLTLVEKQLEEQST 115


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 594 SPCCNSTPYLSLWNFALSCFNAYSS 520
           S   NS  Y  LWNF+ + F  YSS
Sbjct: 124 SASTNSHSYDCLWNFSCNSFPEYSS 148


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 120 QTTSTDVPPSKIIFIDDFMNDKN 52
           Q     VPP ++  +DD+ N KN
Sbjct: 46  QIAKLSVPPHEMRVVDDYSNSKN 68


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 462 WRKAIRASNSALSTSHCDLSSSNLAHSCWIKCK 364
           W    R   S +S S    S + LA  C++KC+
Sbjct: 308 WDYKTRIQESCISVSSLFTSKTLLASFCFVKCQ 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,323
Number of Sequences: 5004
Number of extensions: 55093
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)