Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7n06
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    29   0.48 
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy...    28   1.1  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    25   7.9  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 574 LIDATVFGSGVPNFILAAQSLQIFWWKISGGNV 672
           L D TVF SG+PN + + ++L+ ++ K+  G++
Sbjct: 236 LTDRTVFISGLPNELCSTENLKAYFDKLDVGSI 268


>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 349 FPVIALPKSVISCGIYGIPLVLSVVGLQLYTAALLGRCW 465
           F ++A  + V++C I  +P+    V + ++  +L+G  W
Sbjct: 196 FDLVAPNEHVVACDIANVPMADETVDIAVFCLSLMGTNW 234


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 194 G*MEIAPRKLHSRSRRPSPWWCLV 265
           G     P  L ++SR P PW CL+
Sbjct: 161 GLFRTGPDSLAAQSRIPFPWLCLI 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,313
Number of Sequences: 5004
Number of extensions: 62403
Number of successful extensions: 194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)