Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7n06
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125971-5|AAD14765.1| 484|Caenorhabditis elegans Hypothetical ... 60 2e-09
AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical ... 53 2e-07
AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical ... 52 3e-07
U23518-2|AAC70884.4| 496|Caenorhabditis elegans Hypothetical pr... 44 8e-05
U00055-6|AAA50724.1| 494|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AL034393-17|CAA22315.1| 503|Caenorhabditis elegans Hypothetical... 35 0.048
Z78061-3|CAB60286.1| 662|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL117200-16|CAB60587.1| 662|Caenorhabditis elegans Hypothetical... 29 4.2
Z48638-6|CAA88567.1| 541|Caenorhabditis elegans Hypothetical pr... 28 5.5
U80439-3|AAB37640.1| 323|Caenorhabditis elegans Dehydrogenases,... 28 7.3
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 28 7.3
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 28 7.3
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 28 7.3
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 28 7.3
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 28 7.3
Z54269-1|CAA91022.2| 815|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z48584-8|CAK55179.1| 435|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z48584-7|CAH04712.1| 448|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z48584-5|CAD57717.1| 501|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z48584-4|CAD57716.1| 536|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z48584-3|CAD57715.1| 524|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z48584-2|CAA88477.2| 481|Caenorhabditis elegans Hypothetical pr... 27 9.6
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 27 9.6
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 27 9.6
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 27 9.6
AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical... 27 9.6
>AF125971-5|AAD14765.1| 484|Caenorhabditis elegans Hypothetical
protein Y4C6B.2a protein.
Length = 484
Score = 59.7 bits (138), Expect = 2e-09
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Frame = +1
Query: 298 GLSVLFTILCIVDLFGVFPVIALPKSVISCG-IYGIPLVLSVVGLQLYTAALLGRCWLLA 474
G+S+L T L IV +IALP +++S G + G L+L + YT LL W +
Sbjct: 10 GMSILVTALFIVGETAGGGLIALPTAIVSTGAVTGAFLLLVAAVVCTYTGILLAENWTIL 69
Query: 475 KEITPIISEKNRSPYAAVAQLAFGDPARRLVIFLIDATVFGSGVPNFILAAQSLQIFWWK 654
+E+ P + R PY A+ A G V ++ T FG+ V +LAA++ +
Sbjct: 70 QELYPEYRDHCRKPYPAMGLRAIGPKFAHFVSAMLQVTQFGTAVVFVLLAAKNGENMLHA 129
Query: 655 ISGGNVGVTYCI 690
G +V Y I
Sbjct: 130 NFGTHVSFCYMI 141
>AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical
protein Y59H11AR.4 protein.
Length = 457
Score = 52.8 bits (121), Expect = 2e-07
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 355 VIALPKSVISCGIYGIPLVLSVVGL-QLYTAALLGRCWLLAKEITPIISEKNRSPYAAVA 531
++ALP ++ S G G + L V+ L YTA LLG W++ K SE R+PY +A
Sbjct: 23 LVALPSAMQSLGFMGGTITLIVMCLITYYTATLLGNNWIIMKTRWSEYSEHCRNPYPEMA 82
Query: 532 QLAFGDPARRLVIFLIDATVFGSGVPNFILAAQSLQIFWWKISGGNVGVTYC 687
A G F TVFG +LAA++L ++G +G T C
Sbjct: 83 HKALGTWMGMTTNFCTYFTVFGGTAVFSLLAAKTLAEV---LNGFGIGATMC 131
>AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical
protein Y32F6A.4 protein.
Length = 519
Score = 52.4 bits (120), Expect = 3e-07
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Frame = +1
Query: 298 GLSVLFTILCIVDLFGVFPVIALPKSVISCGIY-GIPLVLSVVGLQLYTAALLGRCWLLA 474
GL+ T L +V ++ALP ++I + G+ + + ++G+ YTA +LG W +
Sbjct: 54 GLNWFVTGLFVVGDLAGGGIVALPTAIIQAEFWTGLIVCVILIGVVTYTAYVLGLSWNIL 113
Query: 475 KEITPIISEKNRSPYAAVAQLAFGDPARRLVIFLIDATVFGSGVPNFILAAQSLQIFWWK 654
P R PY + A G + LV ID T F V +LA++++
Sbjct: 114 LSTWPEYRHHCRKPYPEIGGRAMGKTCQLLVSICIDVTQFMISVVYLLLASKNIMNMIIA 173
Query: 655 ISGGNVGVTYCI 690
SG + +++CI
Sbjct: 174 FSGTH--ISFCI 183
>U23518-2|AAC70884.4| 496|Caenorhabditis elegans Hypothetical
protein F21D12.3 protein.
Length = 496
Score = 44.4 bits (100), Expect = 8e-05
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +1
Query: 307 VLFTILCIVDLFGVFPVIALPKSVISCGI-YGIPLVLSVVGLQLYTAALLGRCWLLAKEI 483
V+ I I D+ G V+A+P + G+ GI ++L+V YT LLG+ W E
Sbjct: 47 VIAAIFIIADMVGG-GVVAMPVAFKLSGLPMGILIMLTVAVSFEYTGYLLGKVWNKIMER 105
Query: 484 TPIISEKNRSPYAAVAQLAFGDPARRLVIFLIDATVFGSGVPNFILAAQSLQIF 645
P I R P+ +A+ G +R L + T FG V +L+A + F
Sbjct: 106 NPHIG-VCRKPFPEMAKRTMGTNMQRFTSVLGNVTQFGVSVVYLLLSANIIHFF 158
>U00055-6|AAA50724.1| 494|Caenorhabditis elegans Hypothetical
protein R02F2.8 protein.
Length = 494
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +1
Query: 355 VIALPKSVISCGIYGIPLVLSVVGL-QLYTAALLGRCWLLAKEITPIISEKNRSPYAAVA 531
+IAL ++ S G+ ++LS+ + LYTA L W + + P + R PY +A
Sbjct: 42 MIALSYALTSMGLIPGLILLSLCSIFSLYTALELCWTWKIMQNRWPEYRDHCRKPYGEMA 101
Query: 532 QLAFGDPARRLVIFLIDATVFGSGVPNFILAAQSLQI 642
G R + F+I T G +LAA++L I
Sbjct: 102 YRTIGRKMRSFIAFMICITQIGFATVLVLLAAKNLSI 138
>AL034393-17|CAA22315.1| 503|Caenorhabditis elegans Hypothetical
protein Y18D10A.23 protein.
Length = 503
Score = 35.1 bits (77), Expect = 0.048
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +1
Query: 262 SHDRYTVGETTGGLSVLFTILCIV-DLFGVFPVIALPKSVISCG-IYGIPLVLSVVGLQL 435
S D + + G+S L + IV D+ G +I+LP ++ G I G L+L
Sbjct: 26 STDSSSTYHNSHGISWLMAAVFIVGDMMGA-GMISLPLALGRSGLIAGCVLILLASIFSG 84
Query: 436 YTAALLGRCWLLAKEITPIISEKNRSPYAAVAQLAFGDPARRLVIFLIDATVF 594
YT LG W + + P R PY +A A G+ AR++V + + F
Sbjct: 85 YTGIQLGENWEMMQIRWPKYRTHCRRPYPEMAYRALGNWARQVVAVCLVVSQF 137
>Z78061-3|CAB60286.1| 662|Caenorhabditis elegans Hypothetical
protein C48G7.3 protein.
Length = 662
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/73 (20%), Positives = 31/73 (42%)
Frame = +3
Query: 423 WPAAIHRCPAGEVLAIGQRNHSYYQRKEQESIRSCGTTSVRRSGQEAGDLSDRRHRLRLW 602
W + G+ +G + Q ++ +S R+ G S + + D D + W
Sbjct: 64 WENLLDLAHHGDESTMGLKVSEPIQEEDSDSDRTAGGDSTCQMDSDEDDDDDDEDEMIRW 123
Query: 603 RSKLHLSRPEPAD 641
+++ + RP P+D
Sbjct: 124 QTEKMMRRPLPSD 136
>AL117200-16|CAB60587.1| 662|Caenorhabditis elegans Hypothetical
protein C48G7.3 protein.
Length = 662
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/73 (20%), Positives = 31/73 (42%)
Frame = +3
Query: 423 WPAAIHRCPAGEVLAIGQRNHSYYQRKEQESIRSCGTTSVRRSGQEAGDLSDRRHRLRLW 602
W + G+ +G + Q ++ +S R+ G S + + D D + W
Sbjct: 64 WENLLDLAHHGDESTMGLKVSEPIQEEDSDSDRTAGGDSTCQMDSDEDDDDDDEDEMIRW 123
Query: 603 RSKLHLSRPEPAD 641
+++ + RP P+D
Sbjct: 124 QTEKMMRRPLPSD 136
>Z48638-6|CAA88567.1| 541|Caenorhabditis elegans Hypothetical
protein ZK892.3 protein.
Length = 541
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 512 LLFFSLIIGVISLANSQHLPSRAAVYSCRPTT 417
+ F S+ IGV+SL S +PS A Y R TT
Sbjct: 135 IFFASIAIGVVSLILSAAIPSLIAFYIFRFTT 166
>U80439-3|AAB37640.1| 323|Caenorhabditis elegans Dehydrogenases,
short chain protein1 protein.
Length = 323
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/46 (23%), Positives = 28/46 (60%)
Frame = +1
Query: 382 SCGIYGIPLVLSVVGLQLYTAALLGRCWLLAKEITPIISEKNRSPY 519
+ GI G+P LSV G++++ A + +++ + + P++ + +R +
Sbjct: 96 NAGIMGMPFELSVDGIEMHFATNVFGHYVVVERLLPLLLKTDRPDF 141
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 402 PPSPVSGWPAA-IHRCPAGEVLAIGQRNHSYYQRKEQESIRSCGTTSVRR 548
PPSP++ P P+G V + Q+N +Q+++++ ++ S+ R
Sbjct: 29 PPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQNSMAR 78
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 402 PPSPVSGWPAA-IHRCPAGEVLAIGQRNHSYYQRKEQESIRSCGTTSVRR 548
PPSP++ P P+G V + Q+N +Q+++++ ++ S+ R
Sbjct: 31 PPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQNSMAR 80
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 402 PPSPVSGWPAA-IHRCPAGEVLAIGQRNHSYYQRKEQESIRSCGTTSVRR 548
PPSP++ P P+G V + Q+N +Q+++++ ++ S+ R
Sbjct: 28 PPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQNSMAR 77
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 402 PPSPVSGWPAA-IHRCPAGEVLAIGQRNHSYYQRKEQESIRSCGTTSVRR 548
PPSP++ P P+G V + Q+N +Q+++++ ++ S+ R
Sbjct: 66 PPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQNSMAR 115
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 402 PPSPVSGWPAA-IHRCPAGEVLAIGQRNHSYYQRKEQESIRSCGTTSVRR 548
PPSP++ P P+G V + Q+N +Q+++++ ++ S+ R
Sbjct: 140 PPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQNSMAR 189
>Z54269-1|CAA91022.2| 815|Caenorhabditis elegans Hypothetical
protein F02C12.1 protein.
Length = 815
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 354 RKHSEEIYYAEDSKQNAEPTGGFANSVAVVTRHHQGLGLRLLEW 223
+K +EEI E + N + A+VT+ + G+GL L+W
Sbjct: 131 KKGTEEIELFEAVQANPKLEKKHQIGAAIVTQKYYGIGLARLDW 174
>Z48584-8|CAK55179.1| 435|Caenorhabditis elegans Hypothetical
protein ZK1321.2f protein.
Length = 435
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 425 PTTDRTRGMPYIPQLITLLGSAMTGNTPKRSTMQRIVN 312
P T T+G PY Q++T+ S M T ST+ R N
Sbjct: 31 PDTSSTQGHPYTDQIVTINVSGMRFQT-FESTLSRYPN 67
>Z48584-7|CAH04712.1| 448|Caenorhabditis elegans Hypothetical
protein ZK1321.2e protein.
Length = 448
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 425 PTTDRTRGMPYIPQLITLLGSAMTGNTPKRSTMQRIVN 312
P T T+G PY Q++T+ S M T ST+ R N
Sbjct: 44 PDTSSTQGHPYTDQIVTINVSGMRFQT-FESTLSRYPN 80
>Z48584-5|CAD57717.1| 501|Caenorhabditis elegans Hypothetical
protein ZK1321.2d protein.
Length = 501
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 425 PTTDRTRGMPYIPQLITLLGSAMTGNTPKRSTMQRIVN 312
P T T+G PY Q++T+ S M T ST+ R N
Sbjct: 85 PDTSSTQGHPYTDQIVTINVSGMRFQT-FESTLSRYPN 121
>Z48584-4|CAD57716.1| 536|Caenorhabditis elegans Hypothetical
protein ZK1321.2c protein.
Length = 536
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 425 PTTDRTRGMPYIPQLITLLGSAMTGNTPKRSTMQRIVN 312
P T T+G PY Q++T+ S M T ST+ R N
Sbjct: 120 PDTSSTQGHPYTDQIVTINVSGMRFQT-FESTLSRYPN 156
>Z48584-3|CAD57715.1| 524|Caenorhabditis elegans Hypothetical
protein ZK1321.2b protein.
Length = 524
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 425 PTTDRTRGMPYIPQLITLLGSAMTGNTPKRSTMQRIVN 312
P T T+G PY Q++T+ S M T ST+ R N
Sbjct: 120 PDTSSTQGHPYTDQIVTINVSGMRFQT-FESTLSRYPN 156
>Z48584-2|CAA88477.2| 481|Caenorhabditis elegans Hypothetical
protein ZK1321.2a protein.
Length = 481
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 425 PTTDRTRGMPYIPQLITLLGSAMTGNTPKRSTMQRIVN 312
P T T+G PY Q++T+ S M T ST+ R N
Sbjct: 77 PDTSSTQGHPYTDQIVTINVSGMRFQT-FESTLSRYPN 113
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 340 FGVFPVIALPKSVISCGIYGIPLVLSVVGLQLYTAALLGRCWLLAKEITPIISEKN--RS 513
F + P I+ P ++ PL + + QLYT A L L +I+P ++ ++ RS
Sbjct: 295 FSLQPSISSPLLMLQQHHQNSPLFQAQIS-QLYTYAALASAGLYGPQISPHLASQSPFRS 353
Query: 514 PYAAVAQLAFGD 549
P L G+
Sbjct: 354 PLVTPKNLGLGE 365
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 340 FGVFPVIALPKSVISCGIYGIPLVLSVVGLQLYTAALLGRCWLLAKEITPIISEKN--RS 513
F + P I+ P ++ PL + + QLYT A L L +I+P ++ ++ RS
Sbjct: 295 FSLQPSISSPLLMLQQHHQNSPLFQAQIS-QLYTYAALASAGLYGPQISPHLASQSPFRS 353
Query: 514 PYAAVAQLAFGD 549
P L G+
Sbjct: 354 PLVTPKNLGLGE 365
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 340 FGVFPVIALPKSVISCGIYGIPLVLSVVGLQLYTAALLGRCWLLAKEITPIISEKN--RS 513
F + P I+ P ++ PL + + QLYT A L L +I+P ++ ++ RS
Sbjct: 295 FSLQPSISSPLLMLQQHHQNSPLFQAQIS-QLYTYAALASAGLYGPQISPHLASQSPFRS 353
Query: 514 PYAAVAQLAFGD 549
P L G+
Sbjct: 354 PLVTPKNLGLGE 365
>AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical
protein Y73B3A.5 protein.
Length = 310
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 340 FGVFPVIALPKSVISCGIYGIPLVLSVVGLQLYTAALLGRCWLLAKEITPIISEKN--RS 513
F + P I+ P ++ PL + + QLYT A L L +I+P ++ ++ RS
Sbjct: 197 FSLQPSISSPLLMLQQHHQNSPLFQAQIS-QLYTYAALASAGLYGPQISPHLASQSPFRS 255
Query: 514 PYAAVAQLAFGD 549
P L G+
Sbjct: 256 PLVTPKNLGLGE 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,088,185
Number of Sequences: 27780
Number of extensions: 374137
Number of successful extensions: 1121
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -