Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7n06
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -2

Query: 164 EKGKRKINKLTDHRHTLSHHFLRKLNKIIFIFYRTFLNIILGIA*WVARWLDRD 3
           E   RK    T     LS  F  + N   F+F     +I++ +  WV+ W++ +
Sbjct: 215 ETNDRKEKLATGIYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHE 268


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 560 LLAGSPNASCATAAYGLLFFSLIIGVISL 474
           LL+G  ++S    A+G+LF+ L  G + L
Sbjct: 765 LLSGHYDSSVDVYAFGILFWYLCAGHVRL 793


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 560 LLAGSPNASCATAAYGLLFFSLIIGVISL 474
           LL+G  ++S    A+G+LF+ L  G + L
Sbjct: 803 LLSGHYDSSVDVYAFGILFWYLCAGHVRL 831


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 630 EPADILVEDLRW*RWRN 680
           EP DIL+  L W  W N
Sbjct: 335 EPPDILMPALTWLGWIN 351


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 478 LWPIASTSPAGQRCIAAGQP 419
           L+P+A+TSP  Q  I   +P
Sbjct: 395 LYPMATTSPQSQSTIQTLRP 414


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 304 SVLFTILCIVDL 339
           S++FTILCI+ L
Sbjct: 30  SLIFTILCILTL 41


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 304 SVLFTILCIVDL 339
           S++FTILCI+ L
Sbjct: 30  SLIFTILCILTL 41


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 304 SVLFTILCIVDL 339
           S++FTILCI+ L
Sbjct: 30  SLIFTILCILTL 41


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 304 SVLFTILCIVDL 339
           S++FTILCI+ L
Sbjct: 30  SLIFTILCILTL 41


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 463 STSPAGQRCIAAGQPLTGLGG 401
           S+SP  +   AAGQP    GG
Sbjct: 526 SSSPPAKGAAAAGQPSKRNGG 546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,588
Number of Sequences: 438
Number of extensions: 4437
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)