Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7n02
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.066
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   1.9  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.5  
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    26   5.8  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   7.6  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   7.6  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = -3

Query: 528 PSRI*AGSATIPSHDVFEQRTAGRHSQWPAPPGRGSASRTNLSNTSFLVELRSQNH--PS 355
           PS   + S++ PS    +  ++ + S   +   + S+S ++ S +S      S++   PS
Sbjct: 154 PSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPS 213

Query: 354 SIDASPSFSES*FLRGAVPAS*HSS 280
           S  +S  FS S F+    PAS  SS
Sbjct: 214 SSKSSSKFSSSSFITSTTPASSSSS 238


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 255  LGLGGCTFLKNATMLEQLLEEINFQRTKEMRQLMK 359
            L LG CT + +  MLE+ L+E N +  + +R  M+
Sbjct: 962  LWLGTCTDIHDHKMLEEKLQESNIEAQRIVRSKMQ 996


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 468 TAGRHSQWPAPPGRGSASRTNLSNTSFLVELRSQNHPSSIDASPSFSES 322
           T+  HS   +     S+S    S++SF+  + S    S++  +PS S S
Sbjct: 214 TSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSS 262


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 353 QLTHLLRSLKVDFFEELFQHRS 288
           +L HL+ S ++DF  E+F+ R+
Sbjct: 53  RLLHLMNSTRLDFMTEVFRERN 74


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 492 KGSSRYLPKYETDVEVFRKDSKKLPIGDP 578
           K SS    KY+T  E + K + ++P+G P
Sbjct: 201 KTSSSNTVKYDTQHETYMKLAHEMPLGKP 229


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 457 SQSMACSSWKRKCLTNKSVQYVVPCRTTKPESSFI 353
           S++  C ++ + CL+ K   ++  CR TKPESS +
Sbjct: 332 SKTQDCCAFSQ-CLS-KIADWLRSCRLTKPESSSV 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,870
Number of Sequences: 5004
Number of extensions: 49925
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)