Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7n02
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0427 - 5626614-5626625,5626716-5626773,5628650-5628756,562... 40 0.002
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 39 0.003
10_01_0016 + 190329-191210,206896-207033,208029-208103,208533-20... 38 0.007
10_08_0910 - 21495633-21495923,21496155-21496430,21496754-214969... 31 0.64
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 31 0.85
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 29 4.5
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 29 4.5
02_05_0973 + 33209385-33209456,33210517-33210721,33210810-332109... 29 4.5
02_02_0469 + 10691648-10691692,10691755-10691907,10692043-106920... 29 4.5
12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333... 28 7.9
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 28 7.9
10_08_0262 + 16307003-16308416,16309501-16309595,16309954-163099... 28 7.9
01_06_1160 - 34996840-34996979,34997316-34997478,34997970-349983... 28 7.9
>04_01_0427 -
5626614-5626625,5626716-5626773,5628650-5628756,
5629202-5629276,5629365-5629557,5631122-5631207
Length = 176
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +3
Query: 456 DDLLFFVRKRHVKGSSRYLPKYETDVEVF-RKDSKKLP----IGDPEIDWEETVYLNLIV 620
DDL+FFV + G R E F R+ + KL I +++WE + YLNLI
Sbjct: 84 DDLVFFVNNMKLNGY-RSSDNMENPPPFFVRRWAPKLEKITNINLADVNWERSFYLNLIA 142
Query: 621 HQFDYTLTLAICT 659
H Y++T+AIC+
Sbjct: 143 HT-SYSVTVAICS 154
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 456 DDLLFFVRKRHVKGSSRYLPKYETDVEVF-RKDSKKLP----IGDPEIDWEETVYLNLIV 620
DDL+FFV + E F R+ + L I +DWE + YLNLI
Sbjct: 375 DDLVFFVNNNMKMHGHGFNDNMEDPPPFFVRRWAPMLEKISNINSAGVDWERSFYLNLIA 434
Query: 621 HQFDYTLTLAICT 659
H YT+T+AIC+
Sbjct: 435 HT-SYTVTVAICS 446
>10_01_0016 +
190329-191210,206896-207033,208029-208103,208533-208639,
209193-209250,210183-210242,210320-210394,210504-210641,
211766-211820,212134-212256,212645-212883
Length = 649
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +3
Query: 567 IGDPEIDWEETVYLNLIVHQFDYTLTLAICT 659
I +DWE + YLNLI H YT+T+AIC+
Sbjct: 372 INSAGVDWERSFYLNLIAHT-SYTVTVAICS 401
>10_08_0910 -
21495633-21495923,21496155-21496430,21496754-21496999,
21497187-21497296,21498228-21498387
Length = 360
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 411 FVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSRYLPKYETDVEVFR 545
F HF F +EQ +D DLLF V + + S+ +L +++F+
Sbjct: 131 FGHHFFFPKEQKLDWADLLFLVTRPVEERSNGFLAYKAFHIQLFK 175
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 31.1 bits (67), Expect = 0.85
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = +3
Query: 294 MLEQLLEEINFQRTKEMRQLMKDDSGFVVLQGTTYWTDLFVRHFLFQEEQAIDCDDLLFF 473
ML+ L E+ +R +E+ L K++SG VL DL LF D LL
Sbjct: 225 MLKAALFELIDRRAEEI--LNKENSGCKVLLCDEKTEDLARMFRLFSRIT----DGLLPV 278
Query: 474 VR--KRHVKGSSRYLPKYETDVEVFRKDSKK-LPIGDPEIDWEETV 602
+ K HV L K+ TD RKD KK + +G PE D+ +V
Sbjct: 279 SKIFKEHVIAEGMSLLKHATDAANSRKDEKKGVVVGLPEQDFVRSV 324
>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -3
Query: 507 SATIPSHDVFEQRTAGRHSQWPAPPGRGSASRTNLSNTSFLVELRSQNHPSSIDASPSFS 328
+A P H V T+ QWP+ +G T T + PSS S SFS
Sbjct: 1205 AAVTPVHQVAALETSSAQQQWPSGRVQGFVPDTTKVTTDQTGQRSDSVLPSSKKKSLSFS 1264
Query: 327 ES 322
S
Sbjct: 1265 SS 1266
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 480 FEQRTAGRHSQWPAPPGRGSASR 412
++QR G H P PPG G+A R
Sbjct: 34 WQQRKRGAHDPAPPPPGSGAAQR 56
>02_05_0973 +
33209385-33209456,33210517-33210721,33210810-33210975,
33211268-33211490,33211928-33212004,33212090-33212183,
33212202-33212271,33212350-33212447,33212565-33212692,
33212772-33212900,33213013-33213421,33213984-33214105,
33214224-33214313,33215092-33215304,33215453-33215584,
33216258-33216333,33216403-33216420
Length = 773
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 387 GTTYWTDLFVRHFLFQEEQAIDCDDLLFFV---RKRHVKGSSRYLPK 518
G+T WT V F Q++ +I D++F + R RH G +RYL +
Sbjct: 207 GSTLWTVALVYGFFKQDKISISGKDIMFTLIARRSRHFAG-TRYLKR 252
>02_02_0469 + 10691648-10691692,10691755-10691907,10692043-10692093,
10692162-10692224,10692327-10693031,10693128-10693223,
10693307-10695547
Length = 1117
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -1
Query: 650 GQRERVVELVHDQVEVDRFLP-VDLRVADRQFFGVFTEHLDVRLVFRQVARRSLHMT-FS 477
GQ + + E + E DRF DL+ Q H+ R +F +V LH T F+
Sbjct: 874 GQFKEIQENIAKVHEEDRFQSGADLKYISMQPIEQHAAHIYTREIFLKVQEELLHSTAFN 933
Query: 476 NKEQQVVTV 450
+E Q+ TV
Sbjct: 934 VQEIQIGTV 942
>12_02_1283 -
27532143-27532517,27532602-27532906,27533053-27533311,
27534412-27534618,27534726-27535181,27535866-27535963,
27536657-27536785,27537371-27537605,27538932-27539039,
27539110-27539160,27539261-27539445,27540207-27540274,
27541535-27541600,27541678-27541730,27542536-27542653,
27542743-27542844,27543525-27543682,27543763-27543840,
27543978-27544069,27544308-27544458
Length = 1097
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +3
Query: 231 YDWNVKMALGLGGCTFLKNATMLEQLLEEINFQRTK----EMRQLMKDDSGFVVLQ 386
Y+WN K +L LGG + + LL+E+ + E LM D + VV Q
Sbjct: 112 YNWNWKTSLLLGGLLSATDPVAVVALLKELGASKKLSTIIEGESLMNDGTAIVVYQ 167
>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -3
Query: 507 SATIPSHDVFEQRTAGRHSQWPAPPGRGSASRTNLSNTS 391
S TIPS V R AG H +WP RG+ N S S
Sbjct: 987 SCTIPS-SVVSYRPAGSHDEWPP---RGNIGEWNNSQDS 1021
>10_08_0262 +
16307003-16308416,16309501-16309595,16309954-16309959,
16310567-16310671
Length = 539
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 197 FPPVIAFI*EQLRLECKNGSGTWRMHVSEECYDAGTAPRRNQLSENEGD 343
F P+ +F+ + L + + S W +HV E D R+Q E E D
Sbjct: 480 FDPITSFLFKDLGPDPYDSSCFWMLHVQENHLDKLKIMGRSQQEEEEED 528
>01_06_1160 -
34996840-34996979,34997316-34997478,34997970-34998388,
34998413-34998620
Length = 309
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 543 GTPRRPSRI*AGSATIPSHDVFEQRTAGRHSQWPAPPGRG-SASRTNLS 400
G+ R + GSA +P RT G S PAP GRG +A+R N S
Sbjct: 93 GSHHRSASQGGGSADLPPVRAVS-RTLGLRSARPAPCGRGATAARANSS 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,262
Number of Sequences: 37544
Number of extensions: 326491
Number of successful extensions: 884
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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