Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7n02
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical pr...    64   7e-11
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U41540-5|AAK39229.2|  666|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z66500-11|CAC42334.1|  625|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z66500-10|CAB61022.1|  666|Caenorhabditis elegans Hypothetical p...    27   9.3  
U80023-2|AAG24035.1|  204|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical...    27   9.3  
AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical...    27   9.3  
AF070920-1|AAC24231.1|  554|Caenorhabditis elegans cytoplasmic s...    27   9.3  
AF063244-1|AAC16434.1|  666|Caenorhabditis elegans cytoplasmic s...    27   9.3  

>U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical
           protein C16E9.2a protein.
          Length = 457

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
 Frame = +3

Query: 327 QRTKEMRQLM-KDDSGFVVLQGTTY-WTDLFVRHFLFQEE-QAIDC----DDLLFFVRKR 485
           +R   +R+L  + D  F ++Q     W  LF+   +     Q+  C    DD++++V + 
Sbjct: 50  RRVTALRKLATQQDGDFTMVQNNEVKWAKLFMEFIIGTAYCQSTKCQAHSDDMIWYVHQA 109

Query: 486 HVKGSSRYLPKYETDVEVFRKDSKKLPIG-DPEIDWEETVYLNLIVHQFDYTLTLAICTR 662
            +  S  Y+   ++ ++VFR+ SK  P   D   +WEETV LN+I+ Q D+ +T A+CT+
Sbjct: 110 KLSNSF-YIQGNQSLLQVFRRHSKNQPTPCDDSYNWEETVCLNIIMQQIDFYVTCAVCTK 168

Query: 663 TSPK 674
           T P+
Sbjct: 169 TGPQ 172


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 587  VDLRVADRQFFGVFTEHLDVRLVFRQVARRSLHMTFSNKEQQVVTVNGLLLLEEEVPHEQ 408
            +DL  +D+Q     TE + V     ++ RR L    SN    V+  +G+L  E EV  E 
Sbjct: 1202 IDLNESDQQTLATLTEQIKVTQAEIELHRRDLKKHESNLSDFVMK-HGILRNEHEVKRED 1260

Query: 407  I 405
            +
Sbjct: 1261 V 1261


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 587  VDLRVADRQFFGVFTEHLDVRLVFRQVARRSLHMTFSNKEQQVVTVNGLLLLEEEVPHEQ 408
            +DL  +D+Q     TE + V     ++ RR L    SN    V+  +G+L  E EV  E 
Sbjct: 1202 IDLNESDQQTLATLTEQIKVTQAEIELHRRDLKKHESNLSDFVMK-HGILRNEHEVKRED 1260

Query: 407  I 405
            +
Sbjct: 1261 V 1261


>U41540-5|AAK39229.2|  666|Caenorhabditis elegans Hypothetical
           protein F35H12.4 protein.
          Length = 666

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 23/91 (25%), Positives = 39/91 (42%)
 Frame = -1

Query: 671 GTGARADGQRERVVELVHDQVEVDRFLPVDLRVADRQFFGVFTEHLDVRLVFRQVARRSL 492
           G  ARA  Q+E  +   HD  E  R  P+  ++   Q      ++   RLV+  V     
Sbjct: 208 GALARAAIQKESTLTAEHDSYEKSRCGPISTKLLTNQ------QNFIGRLVYIGVKLTEH 261

Query: 491 HMTFSNKEQQVVTVNGLLLLEEEVPHEQICP 399
           H+  S +E+ +   + L +L   +P+    P
Sbjct: 262 HLLSSKQEKTIALQSELSMLNSMLPNSVWIP 292


>Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical
           protein F13A7.7 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
 Frame = -3

Query: 495 PSHDVFEQRTAGRHSQWPAP-------PGRGSASRTNLSNTSFLVELRSQNHPSSIDASP 337
           P+ ++FEQ   GRH  +          P    ++ T+ S  S +  L S N  SS D+  
Sbjct: 218 PTWEMFEQAKLGRHKSYSGSQCVKLYIPNLSYSNSTSSSRASSVDSLASFNSQSSTDSQN 277

Query: 336 SFSES 322
           +F ++
Sbjct: 278 TFRKN 282


>Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 387 GTTYWTDLFVRHFLFQEEQAIDCD 458
           GT +WT +++ ++LF+ +Q   C+
Sbjct: 13  GTVFWTTVYLLYYLFKGKQEWKCE 36


>Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13a protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 387 GTTYWTDLFVRHFLFQEEQAIDCD 458
           GT +WT +++ ++LF+ +Q   C+
Sbjct: 13  GTVFWTTVYLLYYLFKGKQEWKCE 36


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +3

Query: 573 DPEIDWEETVYLNLI 617
           DPE D EET YLNLI
Sbjct: 122 DPESDDEETAYLNLI 136


>Z66500-11|CAC42334.1|  625|Caenorhabditis elegans Hypothetical
           protein T05C12.6c protein.
          Length = 625

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 468 TAGRHSQWPAPPGRGSASRTNLSNTSFLVELRSQNHPSSID--ASPSFSES 322
           T   H Q PAP    S+S TN++N S    LR  +  SSI    S SFS+S
Sbjct: 562 TKNNHRQVPAPSQVTSSSLTNVTN-SRKWWLRRPSADSSIQYYGSSSFSDS 611


>Z66500-10|CAB61022.1|  666|Caenorhabditis elegans Hypothetical
           protein T05C12.6b protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 468 TAGRHSQWPAPPGRGSASRTNLSNTSFLVELRSQNHPSSID--ASPSFSES 322
           T   H Q PAP    S+S TN++N S    LR  +  SSI    S SFS+S
Sbjct: 603 TKNNHRQVPAPSQVTSSSLTNVTN-SRKWWLRRPSADSSIQYYGSSSFSDS 652


>U80023-2|AAG24035.1|  204|Caenorhabditis elegans Hypothetical
           protein F07C4.6 protein.
          Length = 204

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +1

Query: 514 LNTRRT-SRCSVKTPKNC 564
           LN RRT  RCSV TPK C
Sbjct: 184 LNCRRTCGRCSVATPKPC 201


>AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 387 GTTYWTDLFVRHFLFQEEQAIDCD 458
           GT +WT +++ ++LF+ +Q   C+
Sbjct: 13  GTVFWTTVYLLYYLFKGKQEWKCE 36


>AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13a protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 387 GTTYWTDLFVRHFLFQEEQAIDCD 458
           GT +WT +++ ++LF+ +Q   C+
Sbjct: 13  GTVFWTTVYLLYYLFKGKQEWKCE 36


>AF070920-1|AAC24231.1|  554|Caenorhabditis elegans cytoplasmic
           signalling transducer protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 468 TAGRHSQWPAPPGRGSASRTNLSNTSFLVELRSQNHPSSID--ASPSFSES 322
           T   H Q PAP    S+S TN++N S    LR  +  SSI    S SFS+S
Sbjct: 491 TKNNHRQVPAPSQVTSSSLTNVTN-SRKWWLRRPSADSSIQYYGSSSFSDS 540


>AF063244-1|AAC16434.1|  666|Caenorhabditis elegans cytoplasmic
           signalling transducer protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 468 TAGRHSQWPAPPGRGSASRTNLSNTSFLVELRSQNHPSSID--ASPSFSES 322
           T   H Q PAP    S+S TN++N S    LR  +  SSI    S SFS+S
Sbjct: 603 TKNNHRQVPAPSQVTSSSLTNVTN-SRKWWLRRPSADSSIQYYGSSSFSDS 652


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,431,090
Number of Sequences: 27780
Number of extensions: 289697
Number of successful extensions: 803
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)