Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7n02
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.7  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   4.7  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   4.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.2  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 647 QRERVVELVHDQVEVD 600
           QRERV  +VH Q  VD
Sbjct: 172 QRERVASVVHRQETVD 187


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 468 FFVRKRHVKGSSRYLPKYETDVEVFRKD 551
           FFV+   +     Y+P+ E+ VE  +K+
Sbjct: 91  FFVKNARMILLEEYIPRVESVVETCKKE 118


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 468 FFVRKRHVKGSSRYLPKYETDVEVFRKD 551
           FFV+   +     Y+P+ E+ VE  +K+
Sbjct: 65  FFVKNARMILLEEYIPRVESVVETCKKE 92


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 626 LVHDQVEVDRFLPVDLRVADRQFFGVFT 543
           +V   +  DR+LP  LR+  ++F  + T
Sbjct: 799 IVKTWIAHDRYLPNSLRILLKRFLDITT 826


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 199 KSTHNDFNF*QVLN*TNYKSN*LVIKAHINRIK 101
           K+ HN+ N+    N  NY +N   +  +IN I+
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIE 120


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 199 KSTHNDFNF*QVLN*TNYKSN*LVIKAHINRIK 101
           K+ HN+ N+    N  NY +N   +  +IN I+
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIE 120


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 199 KSTHNDFNF*QVLN*TNYKSN*LVIKAHINRIK 101
           K+ HN+ N+    N  NY +N   +  +IN I+
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIE 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,174
Number of Sequences: 438
Number of extensions: 3344
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)