Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m24
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    29   0.74 
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   5.2  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   5.2  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.2  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   5.2  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    25   9.1  

>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = +3

Query: 414 LVDTRDGHIKKIKGSGEVPEYCLRPDFGRVPEYLVRRNRKIQKALEEIRLADQNKES 584
           L D    +  K   S ++P++ L  D     + +   + ++++ LEEIR  +Q++++
Sbjct: 70  LEDNEKSNDNKSNTSSKIPDWVLEQDLKIQKDLVKETHARLEQRLEEIRKRNQSRKN 126


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -1

Query: 632 ILQQLLP---FLLADKLAQALLVLISEPDLFESLLDFSVTPY*IFWNSTKIRSEAILGDF 462
           +L Q+ P    L   K++Q  +  I       S+ +F + PY  FW++ ++  E I GD+
Sbjct: 548 LLTQVRPKELILEKSKISQKSIRAIKYCVSSSSIWNF-IKPYTEFWDNERVEREIIAGDY 606


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -1

Query: 578 LVLISEPDLFESLLDFSVTPY*I-FWNSTKIRSEAILGDFA*TLNFLDVPISRVN*PWLH 402
           L  + +   F SL    V PY    WN   I S    G     L+++D P+S +  PWL+
Sbjct: 403 LSTLDQGSAFPSLAKNPVNPYSKDTWNLNVIASTN--GSL---LSYIDNPVSGITCPWLY 457

Query: 401 RFGFSFYSF 375
             G  F +F
Sbjct: 458 -VGMCFSTF 465


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +3

Query: 360 ILNIKKAIKTKAKPVEPRLVDTRDGHIKKIKGSGEVPEYCLRPDFGRVPEYLVRRNRKIQ 539
           +L + KAI      ++P+L    + ++K IK S E         F    E  + + +KI 
Sbjct: 51  LLKLTKAITEYLSNLKPQLSKQENIYVKHIKSSNEAKTEL--EIFNCYKEISISKEKKIN 108

Query: 540 KALEEIRLADQN 575
             L+ +R + Q+
Sbjct: 109 SLLKLVRESAQD 120


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 266 HRSPVRRWQSSSRAEKTATREKRGETAEEL 355
           +  P  RW+SSSR +KT T   +    + L
Sbjct: 613 YSQPPPRWESSSRDDKTNTSSTQPSQVDSL 642


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 489 DFGRVPEYLVRRNRKIQKALEEIRLADQNK 578
           ++G+VP   V  NR+IQ A E + L  Q +
Sbjct: 98  EYGKVPSSPVEGNREIQYAFEPMILHVQTR 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,597
Number of Sequences: 5004
Number of extensions: 39953
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)