Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m24
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    27   8.4  
AF000263-10|AAM22070.1|  163|Caenorhabditis elegans Hypothetical...    27   8.4  
AF000263-9|AAO21391.2|  184|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 263 MHRSPVRRWQSSSRAEKTATREKRGETAEELQNSEY*ESYKN*SQTGGAT 412
           +H SPV+R +   +A +  T+ K       L + E+ E++K     G AT
Sbjct: 626 VHESPVKRHRRDDKAREDTTKLKLLAMYRYLHDCEWSEAFKKPVPLGEAT 675


>AF000263-10|AAM22070.1|  163|Caenorhabditis elegans Hypothetical
           protein T08B2.5d protein.
          Length = 163

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 25/79 (31%), Positives = 38/79 (48%)
 Frame = +2

Query: 119 TQVRIKIRERVKRDKETEAPSYVRLC*DSG*ASRTIPQKGRRHWAAC*MHRSPVRRWQSS 298
           TQ  I I  R   +K + +PS+ R    S   SR+  ++G R  +     RSP RR  S 
Sbjct: 92  TQPEISI-PRSGENKSSRSPSWAREARRS--RSRSRDRRGGRSRS-----RSPSRRRTSR 143

Query: 299 SRAEKTATREKRGETAEEL 355
            R +  ++R +RG    +L
Sbjct: 144 DRRDDRSSRRRRGPIINQL 162


>AF000263-9|AAO21391.2|  184|Caenorhabditis elegans Hypothetical
           protein T08B2.5e protein.
          Length = 184

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 25/79 (31%), Positives = 38/79 (48%)
 Frame = +2

Query: 119 TQVRIKIRERVKRDKETEAPSYVRLC*DSG*ASRTIPQKGRRHWAAC*MHRSPVRRWQSS 298
           TQ  I I  R   +K + +PS+ R    S   SR+  ++G R  +     RSP RR  S 
Sbjct: 113 TQPEISI-PRSGENKSSRSPSWAREARRS--RSRSRDRRGGRSRS-----RSPSRRRTSR 164

Query: 299 SRAEKTATREKRGETAEEL 355
            R +  ++R +RG    +L
Sbjct: 165 DRRDDRSSRRRRGPIINQL 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,477,910
Number of Sequences: 27780
Number of extensions: 226187
Number of successful extensions: 630
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)