Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m19
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0384 - 8294914-8297817                                           29   3.1  
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037...    29   4.1  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    28   7.1  
02_04_0092 + 19655747-19655825,19656362-19656567,19656990-196570...    28   7.1  
09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122     27   9.4  

>09_02_0384 - 8294914-8297817
          Length = 967

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -3

Query: 279 VPPTICSSVAALRTLD--*VELLNLLKAFCSL 190
           +PP++C+S+AALR LD    ++  L +  CSL
Sbjct: 552 IPPSLCASMAALRYLDLSWTQIEQLPREVCSL 583


>02_01_0138 +
           999809-999821,1000456-1001341,1001424-1003221,
           1003716-1003805,1004034-1004111,1004513-1004518,
           1004849-1004958,1005174-1005369
          Length = 1058

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 354 KQRFLQICKGIVDSPVMIVKEQALFEKNLKPEEYINKLQEI-LYD 485
           + R LQIC GI  SPV +   Q   ++N    E+I+ L+E+ +YD
Sbjct: 339 QMRSLQICSGITASPVQVSTSQV--DQN----EWISSLRELTIYD 377


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
 Frame = -3

Query: 552 HHQ*TARSHPIAWDV---HHRS*THHH 481
           HHQ     HP AWDV   HH    H H
Sbjct: 561 HHQRRRHHHPPAWDVEGHHHDRQQHSH 587


>02_04_0092 +
           19655747-19655825,19656362-19656567,19656990-19657096,
           19657189-19657291,19657699-19657881,19657972-19658094
          Length = 266

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 348 SYKQRFLQICKGIVDSPVMIVKEQALFEKNLKPEEY-INKLQEILYDDVF 494
           S    F    KG   SP+ I+K+ A++   L+P E         + D+VF
Sbjct: 43  SLSPNFTTCSKGTYQSPINILKDDAVYNPKLEPLEMDYTAANTTIVDNVF 92


>09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122
          Length = 370

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +3

Query: 186 SSNYKMPLKGLKVLPNPVFSELPQNYRLSEEQKS 287
           SS YK P +G+  +P+  + +  +N+R++ +++S
Sbjct: 33  SSGYKDPDEGITYVPDGTYVDAGENHRVAADRES 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,869,544
Number of Sequences: 37544
Number of extensions: 302424
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)