Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m19
         (635 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L09700-1|AAA28569.1|  399|Drosophila melanogaster GTP-binding pr...    30   2.3  
AE014296-2779|AAF49429.2|  399|Drosophila melanogaster CG12232-P...    30   2.3  
AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep...    29   7.0  
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p...    29   7.0  

>L09700-1|AAA28569.1|  399|Drosophila melanogaster GTP-binding
           protein alpha-subunit protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 246 ELPQNYRLSEEQKSF--YWENGYLVIKELIDFTSLYSYKQRFLQICKGIVD 392
           E P   RL E  K F   W+N +L    LI F + Y   +R ++  K IVD
Sbjct: 257 EDPSQNRLQEALKLFRAVWQNRFLASAGLIVFLNKYDIMERKIRAGKHIVD 307


>AE014296-2779|AAF49429.2|  399|Drosophila melanogaster CG12232-PA
           protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 246 ELPQNYRLSEEQKSF--YWENGYLVIKELIDFTSLYSYKQRFLQICKGIVD 392
           E P   RL E  K F   W+N +L    LI F + Y   +R ++  K IVD
Sbjct: 257 EDPSQNRLQEALKLFRAVWQNRFLASAGLIVFLNKYDIMERKIRAGKHIVD 307


>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch
           depedent uracil/thymineDNA glycosylase protein.
          Length = 1738

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 554 HNGYSQHVHQQTPRYRQTSAAPGFI 628
           HN + Q +H+ +PR++Q ++  G+I
Sbjct: 414 HNQHQQSMHEHSPRHQQPASYSGYI 438


>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
           protein.
          Length = 1738

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 554 HNGYSQHVHQQTPRYRQTSAAPGFI 628
           HN + Q +H+ +PR++Q ++  G+I
Sbjct: 414 HNQHQQSMHEHSPRHQQPASYSGYI 438


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,469,786
Number of Sequences: 53049
Number of extensions: 556751
Number of successful extensions: 1313
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)