Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m19
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.7  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   7.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
 Frame = +3

Query: 228 PNPVFSELPQNYRLSEEQKSFYWENGYLVIKELIDFTSLYSY-KQRFLQICKGIV--DSP 398
           P+P  S +   Y +++    F+     LV+ E+  FT+  ++ + R      G+V   S 
Sbjct: 131 PDPSDSTMAIPYAVTKSAMFFFAATSLLVVAEVCYFTAHVTHPRHRLCVFVAGVVFIVSG 190

Query: 399 VMIVKEQALFEKNLKPEEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGDDITAIHSMF 578
           ++++    ++    K E          +     TY      L  +S FI  ++   +++F
Sbjct: 191 LLMLVGMVMYISVFKAEVGSKLRPRSSFQGPPFTYRYGFSFLLYVSGFITTEVAGTYAIF 250

Query: 579 I 581
           +
Sbjct: 251 L 251



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 610 GCLAVPGGLLMNML*IAVMSSPINCEITSNSLGCSP*VMNTSSYKISWSLLMYSSGF 440
           G + +  GLLM ++ + +  S    E+ S     S       +Y+  +S L+Y SGF
Sbjct: 183 GVVFIVSGLLM-LVGMVMYISVFKAEVGSKLRPRSSFQGPPFTYRYGFSFLLYVSGF 238


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 504 GEHPRLLDVISQFIGDDITAIHSMFINKPP 593
           G+   + D +S FI   ITAI    IN+ P
Sbjct: 47  GDLKGIKDKLSHFIESGITAIWLSPINRSP 76


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 381 GIVDSPVMIVKEQALFEKNLKPEEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGD--D 554
           G+  S V+I  ++         E   NKL+  L   +   + +HP +L  + + I D   
Sbjct: 338 GLFCSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQNHPQHPDILRELLKKIPDLRT 397

Query: 555 ITAIHS 572
           +  +HS
Sbjct: 398 LNTLHS 403


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 49  NKCNKCIVSVLIMRIT*VPTLNKKFPSSV*IIL 147
           N CN+C    + +  T +P + + +P    +IL
Sbjct: 63  NHCNRCTSRQIGIANTLIPFMQQNYPYEWQLIL 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,151
Number of Sequences: 438
Number of extensions: 3824
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)