Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7m17
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 29 0.57
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ... 27 2.3
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 27 3.1
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 26 4.0
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 4.0
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.3
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 25 7.1
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 25 9.3
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 9.3
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 9.3
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 25 9.3
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 29.1 bits (62), Expect = 0.57
Identities = 14/64 (21%), Positives = 30/64 (46%)
Frame = +1
Query: 415 PESE*ALYNVTMAANRKSLFIFLMGLAWRCRYSMPLLLSGTVAVLGRAFMFQIRVQTVQT 594
P++ Y +++ A + + +F+M L W Y L+L + + ++T+ T
Sbjct: 168 PQATCVRYGLSIGAKLEPIVLFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVT 227
Query: 595 LHEN 606
LH +
Sbjct: 228 LHRD 231
>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 315 SVQSRLHRSFAPGGLRSRPCYRGHRGR 395
S+ + +HR+ GGL + PC +G+ G+
Sbjct: 262 SMVADMHRTILYGGLFAYPCSKGNNGK 288
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 447 NGRQSQESFHIPDGACVEVPVQHAVAPKRHSGRA 548
NG +S P G+C+ +P Q VA +++ A
Sbjct: 5 NGSKSSTFTIAPSGSCIALPPQRGVATSKYAVHA 38
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = -1
Query: 367 RDRSPPGANDRCNRLCTLISFPPPCSSIGPLLIFFPTRLDIEVNPLTSRSMVENYLRNS 191
++RS + L I+ C++ PL I TRL IE LTSRS+ N + N+
Sbjct: 106 KNRSHQNLENHERLLFGAIAGAASCATTYPLDIA-RTRLSIETAGLTSRSLAINNVANN 163
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 268 FFPTRLDIEVNPLTSRSMVENYLRN 194
F P L++E P+T++ V N +RN
Sbjct: 491 FIPWSLEVEKQPVTTKLKVPNLVRN 515
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 223 EKLADSPQYLALLERKLKAVRSKNKVVEN 309
EKLA + Q L +++K + +SKN V E+
Sbjct: 6 EKLAAAKQRLLEVKKKKRQAKSKNSVAED 34
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 456 QSQESFHIPDGACVEVPV 509
Q E +PDG+C+++PV
Sbjct: 77 QGAEKICLPDGSCIKLPV 94
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 525 EQRHAVPAPPRKPHQEYEKTLAIGGHCHIVQSL 427
++ HA+P+P PH E+ + G + +Q L
Sbjct: 194 KRSHAIPSPDHIPHIRQEEFAKLNGIHYSLQDL 226
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 296 RWWKTYQRTEPIASVVCSGRAAISTLLSGTQRPIN 400
+WWK + T A+V + + AI T++S Q+ N
Sbjct: 447 KWWKESKGTTSEATVAPTIQEAIETVMSIKQKSRN 481
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 513 HAVAPKRHSGRAGTRLHVPDQGTNRA 590
H A HS +AGT+++ D+G++ +
Sbjct: 264 HPAANNHHSEKAGTQINNKDKGSHNS 289
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 508 YSMPLLLSGTVAVLGRAFMFQIRVQTVQTLHENELAYYEEEDDDQD 645
Y + ++ V VL AF+F + ++ T + ++ + EE+ D++D
Sbjct: 205 YGLLFIIEMGVFVL--AFIFNVLLKNKSTPTDEDVTFTEEDGDEKD 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,134
Number of Sequences: 5004
Number of extensions: 58602
Number of successful extensions: 195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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