Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7m17
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0335 + 19662933-19663334,19663358-19664023 29 2.4
09_04_0720 - 19720844-19720975,19721582-19721809,19722108-197222... 29 3.2
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422... 29 4.2
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 29 4.2
06_01_0168 - 1340119-1340232,1340615-1340815 29 4.2
09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122 28 7.3
07_03_0766 - 21354494-21354772,21355094-21355247,21355340-213555... 28 7.3
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133... 28 7.3
02_05_0552 - 29911280-29912541,29912633-29912762 28 7.3
06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858... 27 9.7
>06_03_0335 + 19662933-19663334,19663358-19664023
Length = 355
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 516 AVAPKR-HSGRAGTRLHVPDQGTNRADVARKRTCVLRRGR 632
A+ P+R H A LHVP G RA AR+R RRGR
Sbjct: 135 ALLPRRLHRPLAARPLHVP--GVPRAPGARRRAAQRRRGR 172
>09_04_0720 -
19720844-19720975,19721582-19721809,19722108-19722290,
19722361-19722476,19722684-19722836,19722977-19723120,
19723257-19723380,19723548-19724479,19725245-19725422
Length = 729
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 466 SCDWRPLSHCTKLIQTP-VCPPIVYRPLCPR*QGRDRSPP 350
SCD +P HC ++ P +C I PL P G PP
Sbjct: 46 SCDRKPARHCERIEVPPSICEIITEMPLAP---GPSMGPP 82
>12_02_0849 -
23640091-23640279,23640537-23640677,23640756-23642203,
23642300-23642372,23642452-23642572,23642689-23642791,
23642979-23643052,23643140-23643285,23643368-23643476,
23643580-23643704,23643989-23644342,23644440-23644503,
23644581-23645032
Length = 1132
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -2
Query: 561 EGASQHGHCAA*EQRHAVPAPPRKPHQEYEKTLAIGG 451
+G HCA + VP P P +Y + + +GG
Sbjct: 497 QGGKSKNHCAPKQGSKFVPRPNHWPKHDYTRKIFVGG 533
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 199 EDNFQPSTEKLADSPQYLALLERKLKAVRSK-NKVVENLSAYRADCI 336
ED + +++ S LALLE+K +S+ N +V+N R DC+
Sbjct: 1130 EDELEELWKEMDYSLTTLALLEQKQVMAQSRINMLVDNFDGLRLDCL 1176
>06_01_0168 - 1340119-1340232,1340615-1340815
Length = 104
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +3
Query: 288 EEQGGGKL--ISVQSRLHRSFAPGGL-RSRPCYRGHRGR*TIG 407
++ GGG+ ++V R RSFAPG RS +R RG IG
Sbjct: 23 DDDGGGEQRPVAVDHRRRRSFAPGAADRSMGDWRRRRGERGIG 65
>09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122
Length = 370
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 474 HIPDGACVEVPVQHAVAPKRHSGRAGTRLHV 566
++PDG V+ H VA R SGR + L V
Sbjct: 45 YVPDGTYVDAGENHRVAADRESGRLRSDLTV 75
>07_03_0766 -
21354494-21354772,21355094-21355247,21355340-21355577,
21355659-21355866,21356148-21356275,21356384-21356521,
21357234-21358080
Length = 663
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +2
Query: 284 DRRTRWWKTYQRTEPIASVV---CSGRAAIS 367
D RWWKT+ RT A +V CS R+ +S
Sbjct: 217 DLVARWWKTFPRTTVGARIVGTRCSLRSEVS 247
>03_06_0352 -
33312443-33312652,33312747-33312854,33313224-33313397,
33313489-33313695,33313700-33313987,33314087-33314319,
33314450-33315263
Length = 677
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -1
Query: 637 RRLPLRSTQVRFRATSARFVP*SGT*RRVPARPLCR--LGATACCTGTSTQAPSGI*KDS 464
RR PL + +RFR ++ + S ARPL L + + + +S+ +PS DS
Sbjct: 80 RRSPLAVSSIRFRRRNSSSIDASAASAFAAARPLMHHLLSSFSSPSPSSSPSPSPSTSDS 139
Query: 463 C 461
C
Sbjct: 140 C 140
>02_05_0552 - 29911280-29912541,29912633-29912762
Length = 463
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 305 KTYQRTEPIASVVCSGRAAISTLLSGTQRPINY 403
++Y+ E + VCS R AIS+ LSGT +N+
Sbjct: 26 QSYKVLELNSEAVCSERNAISSSLSGTTVALNH 58
>06_03_0875 -
25584789-25585307,25585424-25585570,25585734-25585897,
25586015-25586172,25586536-25586904,25586998-25587209,
25587439-25588059,25588561-25588699,25588968-25589044,
25589120-25589800,25590641-25590889
Length = 1111
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 516 HAVPAPPRKPHQEYEKTLAIGGHCHIVQSLFRLRFVL 406
+A AP R P QE + + CH++Q + RL FVL
Sbjct: 95 YADNAPSRLPFQELIVGVGMKA-CHVLQFVLRLAFVL 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,686,215
Number of Sequences: 37544
Number of extensions: 432481
Number of successful extensions: 1308
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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