Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m17
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006693-7|AAF60385.1|  201|Caenorhabditis elegans Hypothetical ...    31   0.53 
AC006749-2|AAF60533.3|  731|Caenorhabditis elegans Hypothetical ...    28   6.5  
U40933-1|AAA81672.1|  699|Caenorhabditis elegans Bbs (bardet-bie...    27   8.6  
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AC006693-7|AAF60385.1|  201|Caenorhabditis elegans Hypothetical
           protein W02H5.2 protein.
          Length = 201

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +1

Query: 202 DNFQPSTEKLADSPQYLALLERKLKAVRSKNK-----VVENLSAYRADCIGRLLRE 354
           D F P          YLA LE++LKAV+ K K     +++++ + + D I +LL +
Sbjct: 35  DPFAPQANTRQTDNTYLAALEKRLKAVKDKKKIDSKSILKDIESLKNDQIFKLLSQ 90


>AC006749-2|AAF60533.3|  731|Caenorhabditis elegans Hypothetical
           protein Y39D8B.3 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = +1

Query: 232 ADSPQYLALLERKLKAVRSKNKVVENLSAYRADCIGRLLREGCDLDPVIGDTEADKLLED 411
           A S + +ALL  +  ++   ++V  N  +  +  I  L  EG DLD  I  T+A KLLE 
Sbjct: 342 AMSDKKIALLSPQFMSILP-DEVANNTISLLSPSILSLHGEGSDLDRQISLTKALKLLES 400

Query: 412 KPESE 426
             + E
Sbjct: 401 TGQEE 405


>U40933-1|AAA81672.1|  699|Caenorhabditis elegans Bbs (bardet-biedl
           syndrome) proteinprotein 2 protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 262 ERKLKAVRSKNKVVENLSAYRADCIGRLLREGC 360
           ER +K++R  NK++EN S  R    GR +   C
Sbjct: 645 ERCVKSLRRLNKIIENCSRLRVGEPGRQIVVSC 677


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical
           protein F37A4.4 protein.
          Length = 1163

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 190 SNFEDNFQPSTEKLADSPQYLALLERKLKAVRSKNKVVENLSAYRADC 333
           +NF D+FQ  +  LA  P  L+ ++   + V  K K +EN  A    C
Sbjct: 344 NNFRDDFQTDSALLATIPDLLSQIDDYDRNV-DKKKFLENFEATFRTC 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,429,580
Number of Sequences: 27780
Number of extensions: 347425
Number of successful extensions: 949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)