Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m13
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.4  
SPCC18B5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.8  
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    27   1.8  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    26   3.1  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    26   4.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   5.5  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   5.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.2  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 254 ELCALAIHDLTKHMAFSEHEMVREQRIRNIALRS 153
           E  A  IHDL +  +F +HE++R +  R  A+++
Sbjct: 216 EKSACEIHDLKESDSFKDHEILRLKEERTAAMQA 249


>SPCC18B5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 116

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 442 LILAGKD-LRSFLNYTNPLYKDKLYTQHQQAFRVYMS*LLWVKTLNAVRRRFY 287
           LI+  KD +R++L +++P          Q+A + Y+  L W   LNA+ + FY
Sbjct: 49  LIITWKDSMRAYLTFSSP----------QEAQKAYLDSLRWGSQLNAIIKPFY 91


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +1

Query: 10  AMCVLK--PIIVINILETIVLTKSLLCFNGTFSYRKYGEDPLNSKVIFNSDRKAIFRMRC 183
           AM ++K  P + + +LE++ + +  + +  T       +   N  +I ++DRK+  R+R 
Sbjct: 156 AMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRD 215

Query: 184 SLTISCSENAMCFVRSWM 237
           ++        + F   W+
Sbjct: 216 AMVRGHKSQMVWFRYGWI 233


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 239 QGHIIRGWFNEAVIYPVKTTPYRIQCLYP 325
           +GH+I       V+YP+ +T  RI   YP
Sbjct: 203 RGHVILSKVAPMVLYPISSTEARILINYP 231


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/72 (22%), Positives = 29/72 (40%)
 Frame = +1

Query: 91  GTFSYRKYGEDPLNSKVIFNSDRKAIFRMRCSLTISCSENAMCFVRSWMARAHNSWLVQR 270
           GT    +  +D  +  V F+SD+K  +  +    + C+E      R  +     +     
Sbjct: 119 GTLPSTRVSKDSKDDNVSFSSDKKQFYVKKEPFPVPCTEPTTSGDRYTVRMKAPTPKYST 178

Query: 271 GCYLPSKNDALP 306
             +LPSK +  P
Sbjct: 179 DNHLPSKKELFP 190


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 458 SDTLSTNSSW*GFTEFPELHQSALQRQTLYSASASLS 348
           + +L T+S+   FT+F  L  S L  +   SAS+SLS
Sbjct: 495 NSSLVTSST--SFTKFSSLSSSQLSTENFTSASSSLS 529


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 275 QPR*TNHELCALAIHDLTKHMAFSEHEMVREQ 180
           QP    HEL AL  H+     A  ++E+ R+Q
Sbjct: 313 QPPQPEHELAALQEHNEAHDAAMRQYELERQQ 344


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 341  HVIALVGKDIECGK 300
            H+IAL+ K + CGK
Sbjct: 2099 HIIALIDKSLRCGK 2112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,138
Number of Sequences: 5004
Number of extensions: 43954
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)