Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m12
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    30   0.32 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   6.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   6.8  
SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ...    25   9.0  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -2

Query: 347 FQNDSLNCNICITVFSWTNVFLRRLCARGYPSDK*RSSK*TFKRVQGNLR*LSVFHPPFL 168
           F  + +N    I +++W N+FL++L       +     K       GN   L  F P  +
Sbjct: 436 FMTEIINNIRSIKLYAWENIFLQKLLQLRNTRELRMLKKIGIVNTIGNFTWL--FAPILV 493

Query: 167 SVSSFGSFLII 135
           S ++FG+F+++
Sbjct: 494 SAATFGTFIVL 504


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 377  SFSALLVPDIFQNDSLN-CNICITV--FSWTNVFLRRLCARGYPSD 249
            SF +  + +    D+L  C I + +  FS +N F  R CA  YP+D
Sbjct: 1157 SFGSSDIGNTILGDALQLCLISMKIHEFSKSNDFCSRSCAERYPTD 1202


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 220  LKVYFDDLHLSLG*PRAHNLLRNTFVQENTVMQMLQL 330
            +K  F+ LH  L  P+A NLL     QEN+++  + L
Sbjct: 1496 IKNLFERLHFLL--PKALNLLEKCICQENSMISKVGL 1530


>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 67  INTAVINKKHKLIDEQSQNSFFGMIRNDPKLETDK 171
           IN A+  + HKL+D  +  +    + + P  +T K
Sbjct: 128 INAAITKRNHKLLDHDAMRAKVQKLVDKPSNDTTK 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,753
Number of Sequences: 5004
Number of extensions: 48622
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)