Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m12
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1035 + 33659965-33660155,33660992-33661066,33661634-336616...    31   1.00 
01_01_0317 - 2569072-2569305,2569418-2569633,2569738-2570016,257...    29   2.3  
11_02_0045 - 7705728-7707581                                           29   3.0  
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257...    28   7.0  

>02_05_1035 +
           33659965-33660155,33660992-33661066,33661634-33661670,
           33662415-33662487,33662635-33662801
          Length = 180

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
 Frame = -3

Query: 250 TNEDHQNKLS-NEFKVI*DNYPF-----FIRLFYLFLVSDHF*SYQKKSFEIAHQSIYVF 89
           +N+D Q K   ++ + + DNY       F+  F++ L + H  SYQ+ S+   +Q +YV+
Sbjct: 47  SNDDGQGKYKKSQHRQLCDNYEINVLSKFVVSFFIQLATMHLRSYQQGSWHHPNQGLYVY 106


>01_01_0317 -
           2569072-2569305,2569418-2569633,2569738-2570016,
           2570491-2570997
          Length = 411

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 294 CPRKHSNANVAIKRVILKNIWNKQSAEGAWLLLEVVAPDQRDKG 425
           C RKH   +   K  +L + W ++    +W   +++  D  DKG
Sbjct: 292 CKRKHREDDPRGKAAMLISYWQEELKNPSWHPFKIIQVDGEDKG 335


>11_02_0045 - 7705728-7707581
          Length = 617

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 49  VFGRLPINTAVINKKHKLIDEQSQNSFFGMIRNDPKLET 165
           +FG   + T + + +H+ +    ++SFFG I N PKLET
Sbjct: 359 LFGNEWLQT-IYSIRHQWVPAYLKDSFFGEIINAPKLET 396


>01_01_0320 -
           2578911-2579144,2579243-2579455,2579580-2579858,
           2579961-2580050,2580258-2580439,2581366-2582470
          Length = 700

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 294 CPRKHSNANVAIKRVILKNIWNKQSAEGAWLLLEVVAPDQRDK 422
           C RK+ N +   K   L + W ++  + +W   +++  D  DK
Sbjct: 581 CKRKYGNDDYETKAAELVSSWQEEIKKPSWHPYKIITVDGEDK 623


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,726
Number of Sequences: 37544
Number of extensions: 273375
Number of successful extensions: 544
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)