Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7m12
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interact...    29   3.6  
AC025716-11|AAK39605.1|  823|Caenorhabditis elegans Yeast mcm (l...    28   4.8  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    28   4.8  

>Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical
           protein R05H10.6 protein.
          Length = 1364

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 194 LSVFHPPFLSVSSFG 150
           LS+ HP FLS+SSFG
Sbjct: 278 LSILHPEFLSISSFG 292


>AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interacting
           protein protein 12 protein.
          Length = 862

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
 Frame = +3

Query: 303 KHSNANVAIKRVILKNIWNKQSAE-GAWLLLEVVAPDQRDKGA*SVRLPASVHNK*AEVR 479
           K  ++  A KR ++ N+++K   E     LLE+V+     K    + LP+S H + + + 
Sbjct: 356 KCKSSEEAAKRNLVSNVFSKDGTELSIEQLLEIVSM----KIGQQIHLPSSSHGECSNLN 411

Query: 480 RLLPSDPV*KSLSQYLRFDVYDLRFISRSVRLVYLSTPIKNN 605
           R LP+  +  S+      + +D  F+  + + + +S P K +
Sbjct: 412 RTLPASDLNCSIG-----EDFDSSFVDANNQTLPVSLPKKTS 448


>AC025716-11|AAK39605.1|  823|Caenorhabditis elegans Yeast mcm
           (licensing factor) relatedprotein 4 protein.
          Length = 823

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 482 SPNFRLFVVDASGQSNRLSSFVPLIRCNYFQQ*PCSF 372
           +PN    ++  SG   R SS +P +R  YFQ   C+F
Sbjct: 238 NPNDVDQLITISGMVTRTSSLIPEMRSGYFQCAVCAF 274


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.2 protein.
          Length = 1594

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 541 YTSKRKYCDKLFYTGSLGNNRR 476
           Y ++ K C+   YTG  GNN R
Sbjct: 607 YNAETKTCESFLYTGCQGNNNR 628


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,515,891
Number of Sequences: 27780
Number of extensions: 267176
Number of successful extensions: 582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)